HL_6IP6_106
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 6IP6|1|2m|A|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP6_106 not in the Motif Atlas
- Geometric match to HL_4WF9_011
- Geometric discrepancy: 0.1665
- The information below is about HL_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
6IP6|1|2m|G|1245
6IP6|1|2m|A|1246
6IP6|1|2m|C|1247
6IP6|1|2m|U|1248
6IP6|1|2m|C|1249
6IP6|1|2m|A|1250
6IP6|1|2m|A|1251
6IP6|1|2m|C|1252
6IP6|1|2m|A|1253
6IP6|1|2m|C|1254
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 21
- 40S ribosomal protein S20
- Chain 2x
- 40S ribosomal protein S16
- Chain 3E
- 40S ribosomal protein S29
- Chain zy
- Transfer RNA; tRNA
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