HL_6IP6_118

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUUAGGGUG

Length

9 nucleotides

Bulged bases

6IP6|1|zy|U|32

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_118 not in the Motif Atlas

Homologous match to HL_6UGG_005

Geometric discrepancy: 0.1559

The information below is about HL_6UGG_005

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6IP6|1|zy|C|30
6IP6|1|zy|U|31
6IP6|1|zy|U|32
6IP6|1|zy|A|33
6IP6|1|zy|G|34
6IP6|1|zy|G|35
6IP6|1|zy|G|36
6IP6|1|zy|U|37
6IP6|1|zy|G|38

Current chains

Chain zy

P-site tRNA

Nearby chains

Chain 2m

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

40S ribosomal protein S16

Chain zv

mRNA