HL_6IP6_130

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AUCUCGUCUGAUCU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_130 not in the Motif Atlas

Homologous match to HL_9DFE_067

Geometric discrepancy: 0.1665

The information below is about HL_9DFE_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6IP6|1|1B|A|32
6IP6|1|1B|U|33
6IP6|1|1B|C|34
6IP6|1|1B|U|35
6IP6|1|1B|C|36
6IP6|1|1B|G|37
6IP6|1|1B|U|38
6IP6|1|1B|C|39
6IP6|1|1B|U|40
6IP6|1|1B|G|41
6IP6|1|1B|A|42
6IP6|1|1B|U|43
6IP6|1|1B|C|44
6IP6|1|1B|U|45

Current chains

Chain 1B

5S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1G

60S ribosomal protein L5

Chain 2E

60S ribosomal protein L11