HL_6IP6_131

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUGUUCAAAGC

Length

11 nucleotides

Bulged bases

6IP6|1|2m|G|821

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|2m|G|819
6IP6|1|2m|U|820
6IP6|1|2m|G|821
6IP6|1|2m|U|822
6IP6|1|2m|U|823
6IP6|1|2m|C|824
6IP6|1|2m|A|825
6IP6|1|2m|A|826
6IP6|1|2m|A|827
6IP6|1|2m|G|828
6IP6|1|2m|C|829

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 3I

40S ribosomal protein S9

Chain 3N

40S ribosomal protein S24