HL_6IP8_009
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 6IP8|1|1A|G|315, 6IP8|1|1A|U|316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP8_009 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.1615
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6IP8|1|1A|G|314
6IP8|1|1A|G|315
6IP8|1|1A|U|316
6IP8|1|1A|A|317
6IP8|1|1A|A|318
6IP8|1|1A|A|319
6IP8|1|1A|C|320
6IP8|1|1A|U|321
6IP8|1|1A|C|322
6IP8|1|1A|C|323
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2F
- 60S ribosomal protein L13
- Chain 2H
- 60S ribosomal protein L15
- Chain 2U
- 60S ribosomal protein L27a
- Chain 2c
- 60S ribosomal protein L36
- Chain 2i
- 60S ribosomal protein L36a
Coloring options: