6IP8 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6IP8_001 | 1/1A/30:52 | No text annotation | ||
| HL_6IP8_002 | 1/1A/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6IP8_003 | 1/1A/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_6IP8_005 | 1/1A/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6IP8_006 | 1/1A/222:226 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6IP8_007 | 1/1A/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_6IP8_008 | 1/1A/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_6IP8_009 | 1/1A/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_6IP8_010 | 1/1A/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6IP8_011 | 1/1A/393:398 | GNRA | homologous HL_5TBW_011 NA | |
| HL_6IP8_139 | 1/1A/1171:1190 | No text annotation | ||
| HL_6IP8_017 | 1/1A/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_6IP8_018 | 1/1A/1363:1374 | No text annotation | geometric HL_2ZZM_002 HL_33487.1 | |
| HL_6IP8_019 | 1/1A/1389:1394 | GNRA | homologous HL_5TBW_016 NA | |
| HL_6IP8_021 | 1/1A/1436:1448 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_6IP8_022 | 1/1A/1480:1484 | No text annotation | ||
| HL_6IP8_023 | 1/1A/1561:1566 | GNRA | homologous HL_8C3A_019 NA | |
| HL_6IP8_024 | 1/1A/1593:1602 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_6IP8_025 | 1/1A/1627:1635 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_6IP8_026 | 1/1A/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6IP8_028 | 1/1A/1816:1823 | No text annotation | homologous HL_8C3A_024 NA | |
| HL_6IP8_029 | 1/1A/1864:1870 | GNRA | homologous HL_5TBW_025 NA | |
| HL_6IP8_030 | 1/1A/1886:1893 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_6IP8_033 | 1/1A/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6IP8_140 | 1/1A/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_030 NA | |
| HL_6IP8_035 | 1/1A/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_6IP8_036 | 1/1A/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6IP8_038 | 1/1A/2523:2532 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_6IP8_040 | 1/1A/2578:2583 | GNRA | homologous HL_5TBW_036 NA | |
| HL_6IP8_041 | 1/1A/2624:2632 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6IP8_127 | 1/1A/2663:2671 | No text annotation | ||
| HL_6IP8_042 | 1/1A/2664:2670 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_6IP8_043 | 1/1A/2704:2712 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_6IP8_044 | 1/1A/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6IP8_045 | 1/1A/2792:2799 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_6IP8_046 | 1/1A/2810:2816 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6IP8_047 | 1/1A/2872:2877 | UNCG | geometric HL_4PMI_004 HL_61337.2 | |
| HL_6IP8_049 | 1/1A/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6IP8_050 | 1/1A/3639:3649 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_6IP8_051 | 1/1A/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6IP8_052 | 1/1A/3724:3730 | No text annotation | ||
| HL_6IP8_053 | 1/1A/3754:3769 | No text annotation | ||
| HL_6IP8_054 | 1/1A/3796:3804 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_6IP8_055 | 1/1A/3873:3882 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_6IP8_057 | 1/1A/4097:4112 | No text annotation | geometric HL_4V9F_003 HL_75660.7 | |
| HL_6IP8_059 | 1/1A/4191:4204 | No text annotation | ||
| HL_6IP8_141 | 1/1A/4210:4222 | No text annotation | homologous HL_8P9A_166 HL_02042.1 | |
| HL_6IP8_061 | 1/1A/4250:4258 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_6IP8_130 | 1/1A/4269:4278 | No text annotation | geometric HL_2ZNI_001 HL_75660.7 | |
| HL_6IP8_062 | 1/1A/4270:4277 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_6IP8_063 | 1/1A/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_6IP8_064 | 1/1A/4321:4326 | GNRA | homologous HL_8C3A_060 NA | |
| HL_6IP8_065 | 1/1A/4352:4362 | No text annotation | geometric HL_2ZZM_002 HL_33487.1 | |
| HL_6IP8_066 | 1/1A/4417:4425 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6IP8_067 | 1/1A/4474:4481 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6IP8_132 | 1/1A/4495:4505 | No text annotation | ||
| HL_6IP8_068 | 1/1A/4497:4503 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_6IP8_069 | 1/1A/4540:4545 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6IP8_070 | 1/1A/4603:4608 | GNRA | homologous HL_8C3A_066 NA | |
| HL_6IP8_071 | 1/1A/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_6IP8_072 | 1/1A/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6IP8_074 | 1/1A/4907:4914 | No text annotation | geometric HL_2Y9H_003 HL_75660.7 | |
| HL_6IP8_075 | 1/1A/4975:4983 | No text annotation | geometric HL_5J7L_201 NA | |
| HL_6IP8_134 | 1/1B/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_6IP8_077 | 1/1B/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_6IP8_078 | 1/1B/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6IP8_135 | 1/1C/45:58 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_6IP8_079 | 1/1C/46:57 | No text annotation | ||
| HL_6IP8_080 | 1/1C/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_6IP8_081 | 1/1C/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6IP8_083 | 1/2m/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6IP8_084 | 1/2m/69:80 | No text annotation | geometric HL_361D_002 NA | |
| HL_6IP8_085 | 1/2m/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_6IP8_088 | 1/2m/321:330 | No text annotation | ||
| HL_6IP8_089 | 1/2m/377:387 | tRNA D-loop | geometric HL_6JXM_001 HL_20490.1 | |
| HL_6IP8_090 | 1/2m/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6IP8_091 | 1/2m/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_6IP8_092 | 1/2m/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_6IP8_137 | 1/2m/491:509 | No text annotation | ||
| HL_6IP8_093 | 1/2m/498:504 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_6IP8_094 | 1/2m/535:548 | No text annotation | ||
| HL_6IP8_095 | 1/2m/566:584 | No text annotation | ||
| HL_6IP8_096 | 1/2m/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6IP8_097 | 1/2m/820:828 | No text annotation | homologous HL_4V88_203 NA | |
| HL_6IP8_098 | 1/2m/833:841 | No text annotation | geometric HL_5TBW_044 NA | |
| HL_6IP8_100 | 1/2m/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6IP8_101 | 1/2m/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_6IP8_102 | 1/2m/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_6IP8_103 | 1/2m/1112:1121 | No text annotation | geometric HL_5ID6_001 HL_69752.4 | |
| HL_6IP8_104 | 1/2m/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_6IP8_105 | 1/2m/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_6IP8_106 | 1/2m/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
| HL_6IP8_138 | 1/2m/1279:1318 | No text annotation | ||
| HL_6IP8_107 | 1/2m/1295:1304 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_6IP8_108 | 1/2m/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_6IP8_109 | 1/2m/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6IP8_111 | 1/2m/1460:1466 | No text annotation | geometric HL_1WZ2_007 HL_75660.7 | |
| HL_6IP8_112 | 1/2m/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_6IP8_113 | 1/2m/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6IP8_114 | 1/2m/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_6IP8_116 | 1/2m/1846:1853 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_6IP8_117 | 1/zy/12:22 | No text annotation | homologous HL_4JYZ_001 NA | |
| HL_6IP8_118 | 1/zy/30:38 | tRNA anticodon loop | homologous HL_4V90_033 NA | |
| HL_6IP8_119 | 1/zy/52:60 | T-loop with 2 stacked bulged bases | homologous HL_3ZGZ_003 HL_33597.2 | |
| HL_6IP8_121 | 1/zz/232:235 | No text annotation | ||
| HL_6IP8_124 | 1/zz/294:299 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6IP8_126 | No text annotation | ||
| HL_6IP8_004 | No text annotation | ||
| HL_6IP8_012 | Externally structured | ||
| HL_6IP8_013 | No text annotation | ||
| HL_6IP8_014 | No text annotation | ||
| HL_6IP8_015 | No text annotation | ||
| HL_6IP8_016 | No text annotation | ||
| HL_6IP8_020 | No text annotation | ||
| HL_6IP8_027 | No text annotation | ||
| HL_6IP8_031 | No text annotation | ||
| HL_6IP8_032 | No text annotation | ||
| HL_6IP8_034 | No text annotation | ||
| HL_6IP8_037 | No text annotation | ||
| HL_6IP8_039 | No text annotation | ||
| HL_6IP8_128 | No text annotation | ||
| HL_6IP8_048 | No text annotation | ||
| HL_6IP8_129 | No text annotation | ||
| HL_6IP8_056 | No text annotation | ||
| HL_6IP8_058 | No text annotation | ||
| HL_6IP8_060 | No text annotation | ||
| HL_6IP8_131 | No text annotation | ||
| HL_6IP8_133 | No text annotation | ||
| HL_6IP8_073 | No text annotation | ||
| HL_6IP8_076 | No text annotation | ||
| HL_6IP8_082 | No text annotation | ||
| HL_6IP8_086 | No text annotation | ||
| HL_6IP8_142 | No text annotation | ||
| HL_6IP8_087 | No text annotation | ||
| HL_6IP8_136 | No text annotation | ||
| HL_6IP8_099 | No text annotation | ||
| HL_6IP8_110 | No text annotation | ||
| HL_6IP8_115 | No text annotation | ||
| HL_6IP8_120 | No text annotation | ||
| HL_6IP8_122 | No text annotation | ||
| HL_6IP8_143 | No text annotation | ||
| HL_6IP8_123 | No text annotation | ||
| HL_6IP8_125 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6IP8_001 | 1/1A/6:7, 1/1C/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_6IP8_002 | 1/1A/12:14, 1/1C/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6IP8_003 | 1/1A/16:18, 1/1C/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.2 | |
| IL_6IP8_004 | 1/1A/26:27, 1/1A/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_6IP8_005 | 1/1A/81:88, 1/1A/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_6IP8_006 | 1/1A/118:122, 1/1A/147:153 | No text annotation | ||
| IL_6IP8_284 | 1/1A/169:173, 1/1A/263:266 | No text annotation | ||
| IL_6IP8_010 | 1/1A/182:189, 1/1A/252:255 | No text annotation | ||
| IL_6IP8_011 | 1/1A/195:196, 1/1A/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_6IP8_012 | 1/1A/199:201, 1/1A/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_6IP8_013 | 1/1A/339:342, 1/1C/32:33 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 IL_55206.1 | |
| IL_6IP8_014 | 1/1A/348:350, 1/1C/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6IP8_015 | 1/1A/387:390, 1/1A/401:414 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_6IP8_016 | 1/1A/415:421, 1/1C/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_6IP8_017 | 1/1A/443:446, 1/1A/1300:1304 | No text annotation | geometric IL_7MLW_007 IL_49140.1 | |
| IL_6IP8_018 | 1/1A/448:450, 1/1A/1297:1298 | Single bulged C | geometric IL_4C7O_003 IL_05642.2 | |
| IL_6IP8_021 | 1/1A/466:472, 1/1A/682:689 | No text annotation | ||
| IL_6IP8_026 | 1/1A/508:510, 1/1A/649:650 | Single bulged A | geometric IL_6WPI_001 IL_14190.2 | |
| IL_6IP8_028 | 1/1A/709:710, 1/1A/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_28408.2 | |
| IL_6IP8_029 | 1/1A/723:724, 1/1A/942:945 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_6IP8_030 | 1/1A/727:731, 1/1A/938:939 | No text annotation | ||
| IL_6IP8_031 | 1/1A/732:735, 1/1A/928:937 | No text annotation | ||
| IL_6IP8_032 | 1/1A/737:740, 1/1A/925:926 | No text annotation | ||
| IL_6IP8_034 | 1/1A/745:752, 1/1A/911:919 | No text annotation | geometric IL_5TBW_020 NA | |
| IL_6IP8_035 | 1/1A/1073:1074, 1/1A/1237:1239 | Single bulged A | geometric IL_2VPL_002 IL_14190.2 | |
| IL_6IP8_037 | 1/1A/1082:1084, 1/1A/1213:1217 | Isolated cWH basepair | geometric IL_4KQ0_001 IL_10892.2 | |
| IL_6IP8_038 | 1/1A/1086:1087, 1/1A/1209:1211 | Single bulged C | geometric IL_3W3S_001 IL_05642.2 | |
| IL_6IP8_041 | 1/1A/1244:1245, 1/1A/1265:1267 | Single bulged G | geometric IL_4C7O_004 IL_28408.2 | |
| IL_6IP8_042 | 1/1A/1357:1360, 1/1A/1379:1382 | No text annotation | ||
| IL_6IP8_248 | 1/1A/1357:1361, 1/1A/1376:1382 | No text annotation | ||
| IL_6IP8_043 | 1/1A/1360:1361, 1/1A/1376:1379 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.2 | |
| IL_6IP8_044 | 1/1A/1425:1429, 1/1A/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_6IP8_045 | 1/1A/1431:1434, 1/1A/1450:1453 | Double sheared | geometric IL_1SAQ_002 NA | |
| IL_6IP8_046 | 1/1A/1467:1468, 1/1A/1496:1498 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_6IP8_047 | 1/1A/1474:1476, 1/1A/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_15011.2 | |
| IL_6IP8_048 | 1/1A/1479:1480, 1/1A/1484:1486 | No text annotation | ||
| IL_6IP8_049 | 1/1A/1520:1522, 1/1A/1655:1657 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_01003.2 | |
| IL_6IP8_050 | 1/1A/1522:1526, 1/1A/1648:1655 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_6IP8_051 | 1/1A/1545:1546, 1/1A/1612:1614 | Single bulged A | geometric IL_7A0S_016 IL_14190.2 | |
| IL_6IP8_052 | 1/1A/1550:1551, 1/1A/1576:1578 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_6IP8_053 | 1/1A/1551:1555, 1/1A/1572:1576 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_6IP8_054 | 1/1A/1586:1589, 1/1A/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_6IP8_055 | 1/1A/1590:1592, 1/1A/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6IP8_056 | 1/1A/1624:1626, 1/1A/1636:1640 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_6IP8_057 | 1/1A/1671:1673, 1/1A/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_6IP8_058 | 1/1A/1686:1688, 1/1A/1848:1851 | No text annotation | ||
| IL_6IP8_060 | 1/1A/1723:1725, 1/1A/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6IP8_061 | 1/1A/1732:1737, 1/1A/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_6IP8_062 | 1/1A/1737:1738, 1/1A/1790:1792 | Minor groove platform | geometric IL_6DLR_003 IL_34520.2 | |
| IL_6IP8_063 | 1/1A/1739:1744, 1/1A/1786:1789 | C-loop | homologous IL_5TBW_040 NA | |
| IL_6IP8_064 | 1/1A/1745:1749, 1/1A/1781:1785 | No text annotation | homologous IL_8C3A_044 NA | |
| IL_6IP8_065 | 1/1A/1749:1751, 1/1A/1779:1781 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_6IP8_066 | 1/1A/1753:1756, 1/1A/1775:1777 | No text annotation | geometric IL_4V84_070 NA | |
| IL_6IP8_067 | 1/1A/1814:1816, 1/1A/1823:1824 | Single bulged A | homologous IL_5TBW_045 NA | |
| IL_6IP8_068 | 1/1A/1858:1860, 1/1A/1874:1876 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_6IP8_069 | 1/1A/1905:1909, 1/1A/2067:2071 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_6IP8_070 | 1/1A/1911:1918, 1/1A/2064:2065 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_6IP8_071 | 1/1A/1918:1920, 1/1A/2063:2064 | No text annotation | ||
| IL_6IP8_072 | 1/1A/1920:1922, 1/1A/2062:2063 | Single bulged C | geometric IL_3SN2_001 IL_05642.2 | |
| IL_6IP8_073 | 1/1A/1926:1933, 1/1A/2053:2058 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_6IP8_074 | 1/1A/1933:1944, 1/1A/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6IP8_075 | 1/1A/1946:1948, 1/1A/2035:2036 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_6IP8_077 | 1/1A/2083:2085, 1/1A/2272:2273 | Single bulged C | geometric IL_4C7O_003 IL_05642.2 | |
| IL_6IP8_078 | 1/1A/2290:2292, 1/1A/2342:2345 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_6IP8_079 | 1/1A/2299:2301, 1/1A/2334:2335 | Single bulged A | geometric IL_3OXE_001 IL_14190.2 | |
| IL_6IP8_080 | 1/1A/2302:2309, 1/1A/2329:2333 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_6IP8_081 | 1/1A/2312:2314, 1/1A/2325:2326 | Single bulged A | geometric IL_5WWT_001 IL_14190.2 | |
| IL_6IP8_082 | 1/1A/2358:2364, 1/1A/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_6IP8_083 | 1/1A/2415:2419, 1/1A/2427:2429 | C-loop | geometric IL_7A0S_047 IL_06671.1 | |
| IL_6IP8_084 | 1/1A/2446:2450, 1/1A/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6IP8_086 | 1/1A/2542:2547, 1/1A/2772:2774 | Isolated non-canonical cWW pair | geometric IL_4WF9_041 IL_76400.1 | |
| IL_6IP8_087 | 1/1A/2589:2593, 1/1A/2752:2756 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_6IP8_088 | 1/1A/2613:2614, 1/1A/2724:2726 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_6IP8_089 | 1/1A/2614:2615, 1/1A/2722:2724 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_6IP8_090 | 1/1A/2646:2648, 1/1A/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.1 | |
| IL_6IP8_091 | 1/1A/2651:2653, 1/1A/2681:2682 | Single bulged G | geometric IL_3NDB_004 NA | |
| IL_6IP8_092 | 1/1A/2656:2662, 1/1A/2672:2678 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6IP8_093 | 1/1A/2832:2838, 1/1A/3850:3853 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_6IP8_094 | 1/1A/2844:2846, 1/1A/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6IP8_095 | 1/1A/2847:2850, 1/1A/3840:3841 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 NA | |
| IL_6IP8_254 | 1/1A/2847:2855, 1/1A/3837:3841 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6IP8_096 | 1/1A/2850:2855, 1/1A/3837:3840 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_6IP8_097 | 1/1A/2867:2872, 1/1A/2877:2883 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_6IP8_098 | 1/1A/2889:2891, 1/1A/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6IP8_099 | 1/1A/2895:2897, 1/1A/3602:3606 | No text annotation | ||
| IL_6IP8_100 | 1/1A/3632:3633, 1/1A/3827:3829 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6IP8_101 | 1/1A/3660:3665, 1/1A/3677:3684 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6IP8_102 | 1/1A/3700:3703, 1/1A/3749:3750 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_6IP8_103 | 1/1A/3704:3705, 1/1A/3745:3748 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_6IP8_104 | 1/1A/3708:3714, 1/1A/3739:3742 | No text annotation | ||
| IL_6IP8_105 | 1/1A/3714:3721, 1/1A/3732:3739 | No text annotation | ||
| IL_6IP8_106 | 1/1A/3722:3724, 1/1A/3730:3731 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6IP8_107 | 1/1A/3780:3781, 1/1A/3811:3814 | Bulged stacked bases | geometric IL_4V9F_070 IL_24886.2 | |
| IL_6IP8_108 | 1/1A/3781:3792, 1/1A/3808:3811 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_6IP8_109 | 1/1A/3895:3898, 1/1A/4563:4565 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_6IP8_110 | 1/1A/3900:3902, 1/1A/4558:4561 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_6IP8_111 | 1/1A/3913:3915, 1/1A/4388:4389 | Single bulged U | geometric IL_5TBW_093 NA | |
| IL_6IP8_286 | 1/1A/3915:3917, 1/1A/4384:4388 | No text annotation | ||
| IL_6IP8_113 | 1/1A/3927:3929, 1/1A/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6IP8_114 | 1/1A/4082:4088, 1/1A/4161:4164 | No text annotation | homologous IL_8P9A_324 IL_52092.1 | |
| IL_6IP8_115 | 1/1A/4243:4246, 1/1A/4263:4267 | No text annotation | ||
| IL_6IP8_258 | 1/1A/4243:4247, 1/1A/4261:4267 | No text annotation | ||
| IL_6IP8_116 | 1/1A/4246:4247, 1/1A/4261:4263 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_6IP8_117 | 1/1A/4291:4293, 1/1A/4317:4318 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_6IP8_118 | 1/1A/4295:4298, 1/1A/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_6IP8_119 | 1/1A/4347:4350, 1/1A/4364:4365 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6IP8_120 | 1/1A/4400:4401, 1/1A/4442:4444 | Major groove platform | geometric IL_4WF9_090 IL_48076.8 | |
| IL_6IP8_121 | 1/1A/4401:4403, 1/1A/4440:4442 | Isolated non-canonical cWW pair | geometric IL_7A0S_014 IL_01003.2 | |
| IL_6IP8_260 | 1/1A/4403:4407, 1/1A/4435:4440 | No text annotation | ||
| IL_6IP8_123 | 1/1A/4412:4416, 1/1A/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6IP8_124 | 1/1A/4453:4454, 1/1A/4526:4528 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_6IP8_125 | 1/1A/4456:4458, 1/1A/4520:4524 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_6IP8_126 | 1/1A/4458:4461, 1/1A/4515:4520 | No text annotation | ||
| IL_6IP8_127 | 1/1A/4466:4468, 1/1A/4489:4491 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_6IP8_287 | 1/1A/4466:4470, 1/1A/4485:4491 | No text annotation | ||
| IL_6IP8_128 | 1/1A/4468:4470, 1/1A/4485:4489 | No text annotation | ||
| IL_6IP8_129 | 1/1A/4495:4497, 1/1A/4503:4505 | Isolated non-canonical cWW pair | geometric IL_5Y7M_007 IL_01003.2 | |
| IL_6IP8_130 | 1/1A/4537:4538, 1/1A/4547:4549 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_6IP8_131 | 1/1A/4580:4582, 1/1A/4721:4723 | Isolated cWH basepair | geometric IL_3CZW_002 NA | |
| IL_6IP8_263 | 1/1A/4580:4585, 1/1A/4717:4723 | No text annotation | ||
| IL_6IP8_132 | 1/1A/4582:4585, 1/1A/4717:4721 | Double sheared | geometric IL_5J7L_256 NA | |
| IL_6IP8_133 | 1/1A/4590:4592, 1/1A/4618:4620 | Isolated non-canonical cWW pair | homologous IL_5TBW_115 NA | |
| IL_6IP8_134 | 1/1A/4596:4603, 1/1A/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_6IP8_135 | 1/1A/4624:4629, 1/1A/4669:4673 | No text annotation | ||
| IL_6IP8_136 | 1/1A/4629:4637, 1/1A/4662:4669 | No text annotation | ||
| IL_6IP8_137 | 1/1A/4638:4640, 1/1A/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_018 IL_10892.2 | |
| IL_6IP8_138 | 1/1A/4641:4642, 1/1A/4655:4658 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_6IP8_139 | 1/1A/4680:4685, 1/1A/4705:4711 | No text annotation | geometric IL_4W90_002 IL_74322.2 | |
| IL_6IP8_141 | 1/1A/4742:4746, 1/1A/4953:4957 | Partly complementary | geometric IL_8D29_010 IL_71154.2 | |
| IL_6IP8_264 | 1/1A/4755:4765, 1/1A/4869:4878 | No text annotation | ||
| IL_6IP8_143 | 1/1A/4891:4896, 1/1A/4924:4929 | No text annotation | ||
| IL_6IP8_145 | 1/1A/4972:4975, 1/1A/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_6IP8_146 | 1/1A/4992:4994, 1/1A/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_01003.2 | |
| IL_6IP8_147 | 1/1A/4996:4997, 1/1A/5053:5055 | No text annotation | ||
| IL_6IP8_148 | 1/1A/5000:5002, 1/1A/5045:5050 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_6IP8_149 | 1/1A/5003:5009, 1/1A/5039:5044 | No text annotation | ||
| IL_6IP8_150 | 1/1A/5012:5017, 1/1A/5032:5036 | No text annotation | ||
| IL_6IP8_151 | 1/1B/15:16, 1/1B/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6IP8_152 | 1/1B/21:27, 1/1B/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_6IP8_153 | 1/1B/28:31, 1/1B/46:51 | No text annotation | homologous IL_7A0S_104 IL_05192.7 | |
| IL_6IP8_154 | 1/1B/32:36, 1/1B/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.12 | |
| IL_6IP8_155 | 1/1B/71:78, 1/1B/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_6IP8_156 | 1/1B/79:81, 1/1B/95:97 | Isolated non-canonical cWW pair | geometric IL_4V88_470 NA | |
| IL_6IP8_157 | 1/1B/82:85, 1/1B/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6IP8_158 | 1/1C/64:66, 1/1C/92:95 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA | |
| IL_6IP8_159 | 1/2m/23:25, 1/2m/649:651 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 IL_01003.2 | |
| IL_6IP8_160 | 1/2m/26:28, 1/2m/646:648 | No text annotation | geometric IL_1N33_070 NA | |
| IL_6IP8_161 | 1/2m/34:36, 1/2m/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_6IP8_162 | 1/2m/37:40, 1/2m/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.2 | |
| IL_6IP8_163 | 1/2m/41:47, 1/2m/479:481 | No text annotation | geometric IL_4V88_387 NA | |
| IL_6IP8_164 | 1/2m/49:51, 1/2m/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6IP8_165 | 1/2m/57:62, 1/2m/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_6IP8_166 | 1/2m/63:69, 1/2m/80:85 | No text annotation | geometric IL_1M5K_001 IL_47352.2 | |
| IL_6IP8_167 | 1/2m/108:110, 1/2m/351:353 | Isolated non-canonical cWW pair | geometric IL_4TS2_004 IL_71625.2 | |
| IL_6IP8_265 | 1/2m/108:112, 1/2m/349:353 | Partly complementary | geometric IL_8D29_010 IL_71154.2 | |
| IL_6IP8_168 | 1/2m/110:112, 1/2m/349:351 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 IL_87720.1 | |
| IL_6IP8_169 | 1/2m/112:115, 1/2m/348:349 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_6IP8_266 | 1/2m/112:123, 1/2m/342:349 | No text annotation | ||
| IL_6IP8_170 | 1/2m/116:123, 1/2m/342:347 | No text annotation | ||
| IL_6IP8_171 | 1/2m/145:151, 1/2m/167:174 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_6IP8_172 | 1/2m/152:155, 1/2m/163:166 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
| IL_6IP8_174 | 1/2m/317:320, 1/2m/331:333 | No text annotation | ||
| IL_6IP8_175 | 1/2m/359:364, 1/2m/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6IP8_176 | 1/2m/366:371, 1/2m/393:394 | No text annotation | geometric IL_5Y58_001 IL_37738.1 | |
| IL_6IP8_177 | 1/2m/411:413, 1/2m/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6IP8_178 | 1/2m/437:439, 1/2m/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6IP8_179 | 1/2m/459:461, 1/2m/468:470 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_6IP8_180 | 1/2m/487:489, 1/2m/511:512 | Single bulged U | geometric IL_4LFB_014 IL_97561.2 | |
| IL_6IP8_181 | 1/2m/491:497, 1/2m/506:509 | No text annotation | ||
| IL_6IP8_182 | 1/2m/497:498, 1/2m/504:506 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6IP8_183 | 1/2m/528:534, 1/2m/549:557 | No text annotation | ||
| IL_6IP8_184 | 1/2m/599:609, 1/2m/634:637 | Isolated cWH basepair with non-canonical cWW | geometric IL_7LYF_001 IL_71194.2 | |
| IL_6IP8_185 | 1/2m/611:617, 1/2m/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_6IP8_186 | 1/2m/663:665, 1/2m/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.2 | |
| IL_6IP8_187 | 1/2m/665:671, 1/2m/1161:1162 | No text annotation | homologous IL_4V88_416 NA | |
| IL_6IP8_188 | 1/2m/673:675, 1/2m/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6IP8_289 | 1/2m/676:680, 1/2m/1025:1029 | tSH-tHW-tHS | homologous IL_8CRE_426 IL_05821.1 | |
| IL_6IP8_190 | 1/2m/802:803, 1/2m/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_6IP8_191 | 1/2m/805:807, 1/2m/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_6IP8_290 | 1/2m/805:815, 1/2m/849:858 | No text annotation | ||
| IL_6IP8_192 | 1/2m/807:815, 1/2m/849:856 | No text annotation | homologous IL_4V88_425 NA | |
| IL_6IP8_193 | 1/2m/873:876, 1/2m/910:912 | No text annotation | geometric IL_4N0T_004 IL_32983.2 | |
| IL_6IP8_196 | 1/2m/922:923, 1/2m/1019:1022 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_74641.2 | |
| IL_6IP8_270 | 1/2m/925:926, 1/2m/1015:1017 | Single bulged U | geometric IL_3NDB_005 NA | |
| IL_6IP8_198 | 1/2m/927:931, 1/2m/1010:1014 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6IP8_199 | 1/2m/931:935, 1/2m/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_6IP8_200 | 1/2m/942:945, 1/2m/981:984 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_6IP8_201 | 1/2m/952:956, 1/2m/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_6IP8_272 | 1/2m/1042:1047, 1/2m/1071:1073 | No text annotation | homologous IL_8P9A_423 IL_31359.1 | |
| IL_6IP8_203 | 1/2m/1047:1051, 1/2m/1067:1071 | tSH-tHW-tHS | geometric IL_4LFB_033 IL_05821.1 | |
| IL_6IP8_291 | 1/2m/1091:1093, 1/2m/1152:1158 | No text annotation | homologous IL_8P9A_425 IL_82706.2 | |
| IL_6IP8_205 | 1/2m/1098:1101, 1/2m/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_6IP8_292 | 1/2m/1101:1103, 1/2m/1129:1131 | Isolated non-canonical cWW pair | geometric IL_1MFQ_003 IL_01003.2 | |
| IL_6IP8_207 | 1/2m/1108:1110, 1/2m/1123:1124 | Minor groove platform | geometric IL_4LFB_004 IL_34520.2 | |
| IL_6IP8_208 | 1/2m/1167:1175, 1/2m/1186:1192 | No text annotation | ||
| IL_6IP8_209 | 1/2m/1203:1205, 1/2m/1693:1696 | Isolated non-canonical cWW with bulges | geometric IL_4V9F_097 IL_68118.2 | |
| IL_6IP8_210 | 1/2m/1206:1208, 1/2m/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_6IP8_275 | 1/2m/1214:1217, 1/2m/1681:1685 | C-loop | homologous IL_8P9A_431 IL_63596.12 | |
| IL_6IP8_212 | 1/2m/1230:1232, 1/2m/1526:1528 | Isolated non-canonical cWW pair | geometric IL_7A0S_014 IL_01003.2 | |
| IL_6IP8_213 | 1/2m/1235:1236, 1/2m/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6IP8_214 | 1/2m/1270:1272, 1/2m/1510:1512 | Isolated cWH basepair | geometric IL_6IA2_003 IL_10892.2 | |
| IL_6IP8_215 | 1/2m/1325:1327, 1/2m/1502:1503 | Single bulged U | geometric IL_4V88_449 NA | |
| IL_6IP8_216 | 1/2m/1328:1333, 1/2m/1498:1501 | Tandem non-canonical cWW pairs | geometric IL_4V88_473 NA | |
| IL_6IP8_277 | 1/2m/1329:1335, 1/2m/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_6IP8_217 | 1/2m/1333:1335, 1/2m/1492:1498 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_6IP8_218 | 1/2m/1337:1338, 1/2m/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_6IP8_219 | 1/2m/1347:1349, 1/2m/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_6IP8_220 | 1/2m/1363:1365, 1/2m/1374:1375 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_6IP8_221 | 1/2m/1395:1399, 1/2m/1447:1450 | No text annotation | ||
| IL_6IP8_222 | 1/2m/1402:1405, 1/2m/1441:1444 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_6IP8_278 | 1/2m/1402:1419, 1/2m/1428:1444 | No text annotation | ||
| IL_6IP8_223 | 1/2m/1453:1456, 1/2m/1470:1475 | No text annotation | ||
| IL_6IP8_224 | 1/2m/1537:1539, 1/2m/1594:1596 | Isolated non-canonical cWW pair | geometric IL_3GM7_002 IL_01003.2 | |
| IL_6IP8_280 | 1/2m/1541:1558, 1/2m/1577:1592 | No text annotation | ||
| IL_6IP8_225 | 1/2m/1560:1562, 1/2m/1573:1575 | Isolated non-canonical cWW pair | geometric IL_1YZ9_001 NA | |
| IL_6IP8_226 | 1/2m/1604:1611, 1/2m/1629:1635 | No text annotation | ||
| IL_6IP8_227 | 1/2m/1612:1613, 1/2m/1626:1628 | Single stack bend | geometric IL_7KGA_003 IL_15011.2 | |
| IL_6IP8_228 | 1/2m/1700:1702, 1/2m/1833:1836 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6IP8_229 | 1/2m/1702:1705, 1/2m/1829:1833 | No text annotation | homologous IL_4V88_464 NA | |
| IL_6IP8_281 | 1/2m/1705:1708, 1/2m/1826:1829 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 IL_15225.2 | |
| IL_6IP8_230 | 1/2m/1706:1708, 1/2m/1826:1828 | Isolated non-canonical cWW pair | geometric IL_4V9F_017 IL_01003.2 | |
| IL_6IP8_231 | 1/2m/1708:1711, 1/2m/1822:1826 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.2 | |
| IL_6IP8_232 | 1/2m/1714:1717, 1/2m/1816:1819 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 NA | |
| IL_6IP8_282 | 1/2m/1714:1720, 1/2m/1813:1819 | No text annotation | ||
| IL_6IP8_233 | 1/2m/1717:1720, 1/2m/1813:1816 | Double sheared | homologous IL_4V88_468 NA | |
| IL_6IP8_234 | 1/2m/1720:1723, 1/2m/1811:1813 | Isolated cWS basepair | geometric IL_4TS2_003 NA | |
| IL_6IP8_235 | 1/2m/1729:1731, 1/2m/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_6IP8_236 | 1/2m/1733:1736, 1/2m/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_6IP8_237 | 1/2m/1739:1741, 1/2m/1793:1795 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_71625.2 | |
| IL_6IP8_238 | 1/2m/1742:1746, 1/2m/1788:1792 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_6IP8_240 | 1/2m/1840:1841, 1/2m/1858:1860 | Single stack bend | geometric IL_5TBW_070 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6IP8_007 | Single bulged C | ||
| IL_6IP8_008 | No text annotation | ||
| IL_6IP8_246 | Isolated non-canonical cWW pair | ||
| IL_6IP8_009 | Single stack bend | ||
| IL_6IP8_247 | Isolated non-canonical cWW pair | ||
| IL_6IP8_019 | Single bulged C | ||
| IL_6IP8_020 | Isolated non-canonical cWW pair | ||
| IL_6IP8_022 | Major groove intercalation | ||
| IL_6IP8_023 | Minor groove platform | ||
| IL_6IP8_024 | No text annotation | ||
| IL_6IP8_025 | Isolated non-canonical cWW pair | ||
| IL_6IP8_285 | Multiple bulged bases | ||
| IL_6IP8_027 | No text annotation | ||
| IL_6IP8_033 | No text annotation | ||
| IL_6IP8_036 | No text annotation | ||
| IL_6IP8_039 | No text annotation | ||
| IL_6IP8_040 | Isolated non-canonical cWW contact | ||
| IL_6IP8_059 | No text annotation | ||
| IL_6IP8_249 | No text annotation | ||
| IL_6IP8_076 | Kink-turn | ||
| IL_6IP8_250 | No text annotation | ||
| IL_6IP8_251 | Isolated non-canonical cWW pair | ||
| IL_6IP8_252 | No text annotation | ||
| IL_6IP8_085 | Single stack bend | ||
| IL_6IP8_253 | No text annotation | ||
| IL_6IP8_255 | No text annotation | ||
| IL_6IP8_256 | No text annotation | ||
| IL_6IP8_112 | No text annotation | ||
| IL_6IP8_257 | No text annotation | ||
| IL_6IP8_259 | Isolated non-canonical cWW pair | ||
| IL_6IP8_122 | No text annotation | ||
| IL_6IP8_261 | No text annotation | ||
| IL_6IP8_262 | No text annotation | ||
| IL_6IP8_140 | Tandem non-canonical cWW pairs | ||
| IL_6IP8_288 | Isolated non-canonical cWW pair | ||
| IL_6IP8_142 | No text annotation | ||
| IL_6IP8_144 | Single bulged C | ||
| IL_6IP8_267 | No text annotation | ||
| IL_6IP8_173 | Double sheared with non-canonical cWW | ||
| IL_6IP8_268 | No text annotation | ||
| IL_6IP8_189 | No text annotation | ||
| IL_6IP8_269 | No text annotation | ||
| IL_6IP8_194 | No text annotation | ||
| IL_6IP8_195 | No text annotation | ||
| IL_6IP8_197 | Tandem non-canonical cWW pairs | ||
| IL_6IP8_271 | No text annotation | ||
| IL_6IP8_202 | No text annotation | ||
| IL_6IP8_204 | No text annotation | ||
| IL_6IP8_273 | Partly complementary | ||
| IL_6IP8_206 | Tandem non-canonical cWW pairs | ||
| IL_6IP8_274 | No text annotation | ||
| IL_6IP8_211 | C-loop with extra cWW pair | ||
| IL_6IP8_276 | Isolated non-canonical cWW pair | ||
| IL_6IP8_279 | Tandem non-canonical cWW pairs | ||
| IL_6IP8_283 | Tandem non-canonical cWW pairs | ||
| IL_6IP8_239 | No text annotation | ||
| IL_6IP8_293 | No text annotation | ||
| IL_6IP8_241 | No text annotation | ||
| IL_6IP8_242 | No text annotation | ||
| IL_6IP8_243 | No text annotation | ||
| IL_6IP8_244 | No text annotation | ||
| IL_6IP8_245 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6IP8_001 | 1/1A/112:116, 1/1A/155:160, 1/1A/275:278 | No text annotation | ||
| J3_6IP8_032 | 1/1A/351:368, 1/1A/373:379, 1/1C/21:24 | No text annotation | ||
| J3_6IP8_002 | 1/1A/380:387, 1/1A/414:415, 1/1C/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6IP8_033 | 1/1A/451:455, 1/1A/701:705, 1/1A/1292:1296 | No text annotation | ||
| J3_6IP8_003 | 1/1A/712:713, 1/1A/955:976, 1/1A/1278:1284 | No text annotation | ||
| J3_6IP8_004 | 1/1A/1531:1537, 1/1A/1622:1624, 1/1A/1640:1643 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_6IP8_005 | 1/1A/1546:1548, 1/1A/1580:1584, 1/1A/1609:1612 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_6IP8_006 | 1/1A/1726:1727, 1/1A/1802:1806, 1/1A/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_6IP8_007 | 1/1A/2393:2399, 1/1A/2805:2807, 1/1A/2819:2822 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6IP8_008 | 1/1A/2402:2405, 1/1A/2785:2791, 1/1A/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6IP8_009 | 1/1A/2406:2410, 1/1A/2434:2441, 1/1A/2781:2784 | No text annotation | ||
| J3_6IP8_035 | 1/1A/2451:2456, 1/1A/2465:2476, 1/1A/2501:2508 | No text annotation | homologous J3_8C3A_053 NA | |
| J3_6IP8_010 | 1/1A/2549:2555, 1/1A/2572:2575, 1/1A/2757:2770 | No text annotation | ||
| J3_6IP8_011 | 1/1A/2575:2576, 1/1A/2585:2589, 1/1A/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6IP8_036 | 1/1A/2598:2602, 1/1A/2737:2738, 1/1A/2742:2747 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_6IP8_012 | 1/1A/3937:3939, 1/1A/4074:4078, 1/1A/4168:4173 | No text annotation | geometric J3_8VTW_006 NA | |
| J3_6IP8_037 | 1/1A/4091:4097, 1/1A/4112:4129, 1/1A/4155:4158 | No text annotation | ||
| J3_6IP8_038 | 1/1A/4228:4230, 1/1A/4331:4342, 1/1A/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6IP8_013 | 1/1A/4241:4243, 1/1A/4267:4269, 1/1A/4278:4283 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_6IP8_014 | 1/1A/4463:4466, 1/1A/4491:4493, 1/1A/4507:4513 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_6IP8_045 | 1/1A/4748:4754, 1/1A/4879:4890, 1/1A/4930:4951 | No text annotation | ||
| J3_6IP8_015 | 1/1A/4970:4972, 1/1A/4986:4991, 1/1A/5060:5063 | No text annotation | ||
| J3_6IP8_040 | 1/1B/9:14, 1/1B/65:66, 1/1B/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_6IP8_017 | 1/1C/44:45, 1/1C/58:64, 1/1C/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_6IP8_018 | 1/2m/40:41, 1/2m/481:487, 1/2m/512:514 | No text annotation | homologous J3_8C3A_082 NA | |
| J3_6IP8_019 | 1/2m/682:685, 1/2m/917:922, 1/2m/1022:1023 | No text annotation | ||
| J3_6IP8_041 | 1/2m/682:685, 1/2m/917:923, 1/2m/1019:1023 | No text annotation | ||
| J3_6IP8_020 | 1/2m/816:819, 1/2m/829:831, 1/2m/843:848 | No text annotation | homologous J3_4V88_032 NA | |
| J3_6IP8_021 | 1/2m/938:941, 1/2m/985:993, 1/2m/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_6IP8_022 | 1/2m/1094:1096, 1/2m/1136:1140, 1/2m/1147:1151 | No text annotation | ||
| J3_6IP8_023 | 1/2m/1218:1221, 1/2m/1645:1651, 1/2m/1673:1680 | No text annotation | homologous J3_4V88_035 NA | |
| J3_6IP8_024 | 1/2m/1225:1230, 1/2m/1528:1532, 1/2m/1638:1641 | No text annotation | ||
| J3_6IP8_025 | 1/2m/1237:1244, 1/2m/1255:1266, 1/2m/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_6IP8_046 | 1/2m/1272:1277, 1/2m/1320:1324, 1/2m/1504:1510 | No text annotation | homologous J3_8CRE_081 J3_87797.2 | |
| J3_6IP8_047 | 1/2m/1340:1345, 1/2m/1384:1389, 1/2m/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_6IP8_043 | 1/2m/1350:1351, 1/2m/1360:1363, 1/2m/1375:1379 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_6IP8_029 | 1/2m/1391:1395, 1/2m/1450:1453, 1/2m/1475:1479 | No text annotation | ||
| J3_6IP8_044 | 1/2m/1391:1395, 1/2m/1450:1456, 1/2m/1470:1479 | No text annotation | ||
| J3_6IP8_030 | 1/2m/1532:1536, 1/2m/1597:1604, 1/2m/1635:1638 | No text annotation | homologous J3_8C3A_044 NA | |
| J4_6IP8_018 | 1/1A/111:112, 1/1A/278:283, 1/1A/304:310, 1/1A/327:330 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_6IP8_002 | 1/1A/196:199, 1/1A/215:222, 1/1A/226:228, 1/1A/240:244 | No text annotation | ||
| J4_6IP8_003 | 1/1A/981:984, 1/1A/1069:1072, 1/1A/1240:1243, 1/1A/1268:1273 | No text annotation | ||
| J4_6IP8_004 | 1/1A/2365:2371, 1/1A/2389:2391, 1/1A/2824:2829, 1/1A/3856:3857 | No text annotation | ||
| J4_6IP8_005 | 1/1A/2443:2445, 1/1A/2515:2519, 1/1A/2536:2539, 1/1A/2777:2779 | No text annotation | ||
| J4_6IP8_019 | 1/1A/2618:2619, 1/1A/2637:2642, 1/1A/2692:2698, 1/1A/2718:2719 | No text annotation | ||
| J4_6IP8_007 | 1/1A/3634:3638, 1/1A/3650:3654, 1/1A/3690:3694, 1/1A/3821:3826 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_6IP8_020 | 1/1A/3696:3698, 1/1A/3752:3753, 1/1A/3770:3780, 1/1A/3814:3819 | No text annotation | homologous J4_8CRE_007 NA | |
| J4_6IP8_021 | 1/1A/3920:3923, 1/1A/4188:4207, 1/1A/4225:4228, 1/1A/4375:4381 | No text annotation | ||
| J4_6IP8_010 | 1/1A/4231:4238, 1/1A/4286:4291, 1/1A/4318:4319, 1/1A/4328:4330 | No text annotation | ||
| J4_6IP8_011 | 1/1A/4587:4590, 1/1A/4620:4621, 1/1A/4676:4679, 1/1A/4712:4715 | No text annotation | ||
| J4_6IP8_022 | 1/2m/98:106, 1/2m/355:357, 1/2m/405:409, 1/2m/431:432 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_6IP8_023 | 1/2m/671:673, 1/2m/1032:1037, 1/2m/1078:1089, 1/2m/1160:1161 | No text annotation | homologous J4_8CRE_022 J4_14595.1 | |
| J4_6IP8_024 | 1/zy/7:10, 1/zy/24:25, 1/zy/43:48, 1/zy/64:65 | tRNA junction | homologous J4_4QEI_001 J4_35610.2 | |
| J4_6IP8_015 | 1/zz/133:135, 1/zz/289:292, 1/zz/301:303, 1/zz/314:315 | No text annotation | ||
| J5_6IP8_009 | 1/1A/20:21, 1/1C/35:42, 1/1C/101:106, 1/1C/113:114, 1/1C/136:137 | No text annotation | ||
| J5_6IP8_002 | 1/1A/1335:1340, 1/1A/1516:1519, 1/1A/1658:1661, 1/1A/2288:2290, 1/1A/2345:2351 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_6IP8_003 | 1/1A/2855:2864, 1/1A/2886:2888, 1/1A/3613:3614, 1/1A/3618:3626, 1/1A/3835:3837 | No text annotation | ||
| J5_6IP8_010 | 1/1A/3903:3910, 1/1A/4392:4403, 1/1A/4440:4453, 1/1A/4528:4534, 1/1A/4552:4557 | No text annotation | ||
| J5_6IP8_005 | 1/1A/3919:3923, 1/1A/4188:4207, 1/1A/4225:4230, 1/1A/4331:4342, 1/1A/4370:4382 | No text annotation | ||
| J5_6IP8_011 | 1/1A/3920:3923, 1/1A/4188:4207, 1/1A/4225:4230, 1/1A/4331:4342, 1/1A/4370:4381 | No text annotation | ||
| J5_6IP8_006 | 1/2m/30:34, 1/2m/521:527, 1/2m/558:565, 1/2m/585:596, 1/2m/640:644 | No text annotation | ||
| J5_6IP8_012 | 1/2m/53:56, 1/2m/89:96, 1/2m/434:436, 1/2m/457:459, 1/2m/470:474 | No text annotation | homologous J5_8CRE_020 J5_58574.1 | |
| J5_6IP8_013 | 1/2m/123:144, 1/2m/175:185, 1/2m/214:219, 1/2m/302:314, 1/2m/336:342 | No text annotation | ||
| J6_6IP8_001 | 1/1A/21:26, 1/1A/57:67, 1/1A/74:78, 1/1A/105:109, 1/1A/332:339, 1/1C/33:35 | No text annotation | ||
| J6_6IP8_002 | 1/1A/1352:1355, 1/1A/1384:1388, 1/1A/1395:1399, 1/1A/1418:1421, 1/1A/1464:1466, 1/1A/1499:1504 | No text annotation | ||
| J7_6IP8_001 | 1/1A/1666:1671, 1/1A/1684:1685, 1/1A/1852:1855, 1/1A/1879:1884, 1/1A/1895:1899, 1/1A/2077:2078, 1/1A/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6IP8_031 | No text annotation | ||
| J3_6IP8_034 | No text annotation | ||
| J3_6IP8_039 | No text annotation | ||
| J3_6IP8_016 | No text annotation | ||
| J3_6IP8_042 | No text annotation | ||
| J3_6IP8_026 | No text annotation | ||
| J3_6IP8_027 | No text annotation | ||
| J3_6IP8_028 | No text annotation | ||
| J4_6IP8_001 | No text annotation | ||
| J4_6IP8_006 | No text annotation | ||
| J4_6IP8_008 | No text annotation | ||
| J4_6IP8_009 | No text annotation | ||
| J4_6IP8_012 | No text annotation | ||
| J4_6IP8_013 | No text annotation | ||
| J4_6IP8_014 | tRNA junction | ||
| J4_6IP8_025 | No text annotation | ||
| J4_6IP8_026 | No text annotation | ||
| J4_6IP8_016 | No text annotation | ||
| J4_6IP8_017 | No text annotation | ||
| J5_6IP8_001 | No text annotation | ||
| J5_6IP8_004 | No text annotation | ||
| J5_6IP8_007 | No text annotation | ||
| J5_6IP8_008 | No text annotation |
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