HL_6IP8_014

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCCCGGCGCGCCGG

Length

14 nucleotides

Bulged bases

6IP8|1|1A|C|991, 6IP8|1|1A|C|995

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|U|989
6IP8|1|1A|C|990
6IP8|1|1A|C|991
6IP8|1|1A|C|992
6IP8|1|1A|G|993
6IP8|1|1A|G|994
6IP8|1|1A|C|995
6IP8|1|1A|G|996
6IP8|1|1A|C|1047
6IP8|1|1A|G|1048
6IP8|1|1A|C|1049
6IP8|1|1A|C|1050
6IP8|1|1A|G|1051
6IP8|1|1A|G|1064

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1H

60S ribosomal protein L6