HL_6IP8_018
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUCGCACGAAAG
- Length
- 12 nucleotides
- Bulged bases
- 6IP8|1|1A|C|1365, 6IP8|1|1A|G|1366, 6IP8|1|1A|C|1367, 6IP8|1|1A|A|1371
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP8_018 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3385
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6IP8|1|1A|C|1363
6IP8|1|1A|U|1364
6IP8|1|1A|C|1365
6IP8|1|1A|G|1366
6IP8|1|1A|C|1367
6IP8|1|1A|A|1368
6IP8|1|1A|C|1369
6IP8|1|1A|G|1370
6IP8|1|1A|A|1371
6IP8|1|1A|A|1372
6IP8|1|1A|A|1373
6IP8|1|1A|G|1374
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 1F
- 60S ribosomal protein L4
- Chain 2F
- 60S ribosomal protein L13
- Chain 2H
- 60S ribosomal protein L15
- Chain 2S
- 60S ribosomal protein L26
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