HL_6IP8_031

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACC

Length

52 nucleotides

Bulged bases

6IP8|1|1A|U|1980, 6IP8|1|1A|G|1981, 6IP8|1|1A|A|1984, 6IP8|1|1A|U|1992, 6IP8|1|1A|U|1997, 6IP8|1|1A|G|2007, 6IP8|1|1A|A|2009, 6IP8|1|1A|C|2011

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|G|1968
6IP8|1|1A|G|1969
6IP8|1|1A|A|1970
6IP8|1|1A|C|1971
6IP8|1|1A|G|1972
6IP8|1|1A|G|1973
6IP8|1|1A|U|1974
6IP8|1|1A|G|1975
6IP8|1|1A|G|1976
6IP8|1|1A|C|1977
6IP8|1|1A|C|1978
6IP8|1|1A|A|1979
6IP8|1|1A|U|1980
6IP8|1|1A|G|1981
6IP8|1|1A|G|1982
6IP8|1|1A|A|1983
6IP8|1|1A|A|1984
6IP8|1|1A|G|1985
6IP8|1|1A|U|1986
6IP8|1|1A|C|1987
6IP8|1|1A|G|1988
6IP8|1|1A|G|1989
6IP8|1|1A|A|1990
6IP8|1|1A|A|1991
6IP8|1|1A|U|1992
6IP8|1|1A|C|1993
6IP8|1|1A|C|1994
6IP8|1|1A|G|1995
6IP8|1|1A|C|1996
6IP8|1|1A|U|1997
6IP8|1|1A|A|1998
6IP8|1|1A|A|1999
6IP8|1|1A|G|2000
6IP8|1|1A|G|2001
6IP8|1|1A|A|2002
6IP8|1|1A|G|2003
6IP8|1|1A|U|2004
6IP8|1|1A|G|2005
6IP8|1|1A|U|2006
6IP8|1|1A|G|2007
6IP8|1|1A|U|2008
6IP8|1|1A|A|2009
6IP8|1|1A|A|2010
6IP8|1|1A|C|2011
6IP8|1|1A|A|2012
6IP8|1|1A|A|2013
6IP8|1|1A|C|2014
6IP8|1|1A|U|2015
6IP8|1|1A|C|2016
6IP8|1|1A|A|2017
6IP8|1|1A|C|2018
6IP8|1|1A|C|2019

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2D

60S ribosomal protein L10-like

Chain 2g

Ubiquitin-60S ribosomal protein L40

Chain zw

Eukaryotic peptide chain release factor subunit 1