HL_6IP8_037

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGCGAUGGCCUCCGUUGCCC

Length

21 nucleotides

Bulged bases

6IP8|1|1A|C|2488, 6IP8|1|1A|C|2489, 6IP8|1|1A|U|2490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|G|2479
6IP8|1|1A|G|2480
6IP8|1|1A|G|2481
6IP8|1|1A|C|2482
6IP8|1|1A|G|2483
6IP8|1|1A|A|2484
6IP8|1|1A|U|2485
6IP8|1|1A|G|2486
6IP8|1|1A|G|2487
6IP8|1|1A|C|2488
6IP8|1|1A|C|2489
6IP8|1|1A|U|2490
6IP8|1|1A|C|2491
6IP8|1|1A|C|2492
6IP8|1|1A|G|2493
6IP8|1|1A|U|2494
6IP8|1|1A|U|2495
6IP8|1|1A|G|2496
6IP8|1|1A|C|2497
6IP8|1|1A|C|2498
6IP8|1|1A|C|2499

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1C

5.8S ribosomal RNA; 5.8S rRNA

Chain 2R

60S ribosomal protein L23a