HL_6IP8_038

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

6IP8|1|1A|U|2530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_038 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1618

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6IP8|1|1A|G|2523
6IP8|1|1A|U|2524
6IP8|1|1A|U|2525
6IP8|1|1A|C|2526
6IP8|1|1A|A|2527
6IP8|1|1A|G|2528
6IP8|1|1A|A|2529
6IP8|1|1A|U|2530
6IP8|1|1A|C|2531
6IP8|1|1A|C|2532

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2L

60S ribosomal protein L19

Chain 2R

60S ribosomal protein L23a

Chain 2a

60S ribosomal protein L34