HL_6IP8_039

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCCGCGAGGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_039 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1434

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6IP8|1|1A|C|2558
6IP8|1|1A|G|2559
6IP8|1|1A|C|2560
6IP8|1|1A|C|2561
6IP8|1|1A|G|2562
6IP8|1|1A|C|2563
6IP8|1|1A|G|2564
6IP8|1|1A|A|2565
6IP8|1|1A|G|2566
6IP8|1|1A|G|2567
6IP8|1|1A|C|2568
6IP8|1|1A|G|2569

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2T

60S ribosomal protein L27