HL_6IP8_043

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

6IP8|1|1A|U|2707, 6IP8|1|1A|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_043 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2386

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6IP8|1|1A|C|2704
6IP8|1|1A|G|2705
6IP8|1|1A|G|2706
6IP8|1|1A|U|2707
6IP8|1|1A|U|2708
6IP8|1|1A|C|2709
6IP8|1|1A|C|2710
6IP8|1|1A|G|2711
6IP8|1|1A|G|2712

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2L

60S ribosomal protein L19

Chain 2O

60S ribosomal protein L22

Chain 2R

60S ribosomal protein L23a