HL_6IP8_053
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAGUAACUAUGACUC
- Length
- 16 nucleotides
- Bulged bases
- 6IP8|1|1A|A|3760
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP8|1|1A|G|3754
6IP8|1|1A|G|3755
6IP8|1|1A|A|3756
6IP8|1|1A|G|3757
6IP8|1|1A|U|3758
6IP8|1|1A|A|3759
6IP8|1|1A|A|3760
6IP8|1|1A|C|3761
6IP8|1|1A|U|3762
6IP8|1|1A|A|3763
6IP8|1|1A|U|3764
6IP8|1|1A|G|3765
6IP8|1|1A|A|3766
6IP8|1|1A|C|3767
6IP8|1|1A|U|3768
6IP8|1|1A|C|3769
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2m
- Small subunit ribosomal RNA; SSU rRNA
- Chain zw
- Eukaryotic peptide chain release factor subunit 1
- Chain zy
- Transfer RNA; tRNA
Coloring options: