HL_6IP8_055

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6IP8|1|1A|A|3876, 6IP8|1|1A|A|3877, 6IP8|1|1A|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_055 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1189

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6IP8|1|1A|G|3873
6IP8|1|1A|G|3874
6IP8|1|1A|G|3875
6IP8|1|1A|A|3876
6IP8|1|1A|A|3877
6IP8|1|1A|C|3878
6IP8|1|1A|G|3879
6IP8|1|1A|G|3880
6IP8|1|1A|G|3881
6IP8|1|1A|C|3882

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2Y

60S ribosomal protein L32