HL_6IP8_056

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGACAUGAGUGAUCGUUUU

Length

20 nucleotides

Bulged bases

6IP8|1|1A|A|3947, 6IP8|1|1A|G|3953, 6IP8|1|1A|U|4060

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|G|3944
6IP8|1|1A|A|3945
6IP8|1|1A|G|3946
6IP8|1|1A|A|3947
6IP8|1|1A|C|3948
6IP8|1|1A|A|3949
6IP8|1|1A|U|3950
6IP8|1|1A|G|3951
6IP8|1|1A|A|3952
6IP8|1|1A|G|3953
6IP8|1|1A|U|4060
6IP8|1|1A|G|4061
6IP8|1|1A|A|4062
6IP8|1|1A|U|4063
6IP8|1|1A|C|4064
6IP8|1|1A|G|4065
6IP8|1|1A|U|4066
6IP8|1|1A|U|4067
6IP8|1|1A|U|4068
6IP8|1|1A|U|4069

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2c

60S ribosomal protein L36

Chain 2o

40S ribosomal protein S3a