HL_6IP8_059

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACUGGGGCGGUAC

Length

14 nucleotides

Bulged bases

6IP8|1|1A|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|G|4191
6IP8|1|1A|A|4192
6IP8|1|1A|C|4193
6IP8|1|1A|U|4194
6IP8|1|1A|G|4195
6IP8|1|1A|G|4196
6IP8|1|1A|G|4197
6IP8|1|1A|G|4198
6IP8|1|1A|C|4199
6IP8|1|1A|G|4200
6IP8|1|1A|G|4201
6IP8|1|1A|U|4202
6IP8|1|1A|A|4203
6IP8|1|1A|C|4204

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2D

60S ribosomal protein L10-like

Chain 2N

60S ribosomal protein L21

Chain 2V

60S ribosomal protein L29

Chain 2i

60S ribosomal protein L36a

Chain zy

Transfer RNA; tRNA