HL_6IP8_060

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUCAAACGGUAACGC

Length

15 nucleotides

Bulged bases

6IP8|1|1A|A|4214, 6IP8|1|1A|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|G|4209
6IP8|1|1A|U|4210
6IP8|1|1A|C|4211
6IP8|1|1A|A|4212
6IP8|1|1A|A|4213
6IP8|1|1A|A|4214
6IP8|1|1A|C|4215
6IP8|1|1A|G|4216
6IP8|1|1A|G|4217
6IP8|1|1A|U|4218
6IP8|1|1A|A|4219
6IP8|1|1A|A|4220
6IP8|1|1A|C|4221
6IP8|1|1A|G|4222
6IP8|1|1A|C|4223

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2D

60S ribosomal protein L10-like

Chain 2N

60S ribosomal protein L21

Chain 2V

60S ribosomal protein L29