HL_6IP8_061

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_061 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1631

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6IP8|1|1A|G|4250
6IP8|1|1A|A|4251
6IP8|1|1A|C|4252
6IP8|1|1A|A|4253
6IP8|1|1A|G|4254
6IP8|1|1A|A|4255
6IP8|1|1A|A|4256
6IP8|1|1A|A|4257
6IP8|1|1A|C|4258

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2E

60S ribosomal protein L11