HL_6IP8_062
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP8_062 not in the Motif Atlas
- Homologous match to HL_8C3A_058
- Geometric discrepancy: 0.1524
- The information below is about HL_8C3A_058
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
6IP8|1|1A|C|4270
6IP8|1|1A|A|4271
6IP8|1|1A|G|4272
6IP8|1|1A|A|4273
6IP8|1|1A|A|4274
6IP8|1|1A|G|4275
6IP8|1|1A|G|4276
6IP8|1|1A|G|4277
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2D
- 60S ribosomal protein L10-like
- Chain 2N
- 60S ribosomal protein L21
- Chain 2i
- 60S ribosomal protein L36a
- Chain zy
- Transfer RNA; tRNA
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