HL_6IP8_072

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6IP8|1|1A|G|4694, 6IP8|1|1A|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_072 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1654

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6IP8|1|1A|C|4688
6IP8|1|1A|U|4689
6IP8|1|1A|G|4690
6IP8|1|1A|A|4691
6IP8|1|1A|A|4692
6IP8|1|1A|C|4693
6IP8|1|1A|G|4694
6IP8|1|1A|C|4695
6IP8|1|1A|C|4696
6IP8|1|1A|U|4697
6IP8|1|1A|C|4698
6IP8|1|1A|U|4699
6IP8|1|1A|A|4700
6IP8|1|1A|A|4701
6IP8|1|1A|G|4702

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2C

60S ribosomal protein L9

Chain 2I

60S ribosomal protein L13a

Chain 2g

Ubiquitin-60S ribosomal protein L40