HL_6IP8_073

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUCCCCCGCGGGGUCC

Length

17 nucleotides

Bulged bases

6IP8|1|1A|C|4771

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|G|4768
6IP8|1|1A|G|4769
6IP8|1|1A|U|4770
6IP8|1|1A|C|4771
6IP8|1|1A|C|4772
6IP8|1|1A|C|4773
6IP8|1|1A|C|4774
6IP8|1|1A|C|4775
6IP8|1|1A|G|4776
6IP8|1|1A|C|4859
6IP8|1|1A|G|4860
6IP8|1|1A|G|4861
6IP8|1|1A|G|4862
6IP8|1|1A|G|4863
6IP8|1|1A|U|4864
6IP8|1|1A|C|4865
6IP8|1|1A|C|4866

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2C

60S ribosomal protein L9

Chain 2G

60S ribosomal protein L14

Chain 2I

60S ribosomal protein L13a