HL_6IP8_074

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

6IP8|1|1A|G|4910, 6IP8|1|1A|A|4911, 6IP8|1|1A|G|4913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_074 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1585

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6IP8|1|1A|G|4907
6IP8|1|1A|G|4908
6IP8|1|1A|A|4909
6IP8|1|1A|G|4910
6IP8|1|1A|A|4911
6IP8|1|1A|G|4912
6IP8|1|1A|G|4913
6IP8|1|1A|C|4914

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2I

60S ribosomal protein L13a