HL_6IP8_082

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

6IP8|1|1C|C|125

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_082 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.2575

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6IP8|1|1C|G|121
6IP8|1|1C|G|122
6IP8|1|1C|U|123
6IP8|1|1C|U|124
6IP8|1|1C|C|125
6IP8|1|1C|C|126
6IP8|1|1C|U|127
6IP8|1|1C|C|128
6IP8|1|1C|C|129

Current chains

Chain 1C

5.8S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2R

60S ribosomal protein L23a