HL_6IP8_084

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

6IP8|1|2m|C|72, 6IP8|1|2m|G|75, 6IP8|1|2m|U|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_084 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.212

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6IP8|1|2m|C|69
6IP8|1|2m|G|70
6IP8|1|2m|G|71
6IP8|1|2m|C|72
6IP8|1|2m|C|73
6IP8|1|2m|G|74
6IP8|1|2m|G|75
6IP8|1|2m|U|76
6IP8|1|2m|A|77
6IP8|1|2m|C|78
6IP8|1|2m|A|79
6IP8|1|2m|G|80

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3H

40S ribosomal protein S6