HL_6IP8_086

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

6IP8|1|2m|C|199

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_086 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2783

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6IP8|1|2m|C|195
6IP8|1|2m|C|196
6IP8|1|2m|U|197
6IP8|1|2m|U|198
6IP8|1|2m|C|199
6IP8|1|2m|G|200
6IP8|1|2m|C|201
6IP8|1|2m|G|202
6IP8|1|2m|G|203
6IP8|1|2m|G|204

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2t

40S ribosomal protein S8