HL_6IP8_087

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCAGUGGUGACUCUAGA

Length

17 nucleotides

Bulged bases

6IP8|1|2m|A|292, 6IP8|1|2m|U|294

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|2m|U|222
6IP8|1|2m|C|223
6IP8|1|2m|A|224
6IP8|1|2m|G|225
6IP8|1|2m|U|287
6IP8|1|2m|G|288
6IP8|1|2m|G|289
6IP8|1|2m|U|290
6IP8|1|2m|G|291
6IP8|1|2m|A|292
6IP8|1|2m|C|293
6IP8|1|2m|U|294
6IP8|1|2m|C|295
6IP8|1|2m|U|296
6IP8|1|2m|A|297
6IP8|1|2m|G|298
6IP8|1|2m|A|299

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 2t

40S ribosomal protein S8

Chain 2v

40S ribosomal protein S11

Chain 3H

40S ribosomal protein S6