HL_6IP8_089

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

6IP8|1|2m|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_089 not in the Motif Atlas

Geometric match to HL_6JXM_001

Geometric discrepancy: 0.3922

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

6IP8|1|2m|G|377
6IP8|1|2m|U|378
6IP8|1|2m|C|379
6IP8|1|2m|G|380
6IP8|1|2m|C|381
6IP8|1|2m|C|382
6IP8|1|2m|G|383
6IP8|1|2m|U|384
6IP8|1|2m|G|385
6IP8|1|2m|C|386
6IP8|1|2m|C|387

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2t

40S ribosomal protein S8

Chain 2v

40S ribosomal protein S11