HL_6IP8_094

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACUCUUUCGAGGC

Length

14 nucleotides

Bulged bases

6IP8|1|2m|C|539, 6IP8|1|2m|U|542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|2m|G|535
6IP8|1|2m|A|536
6IP8|1|2m|C|537
6IP8|1|2m|U|538
6IP8|1|2m|C|539
6IP8|1|2m|U|540
6IP8|1|2m|U|541
6IP8|1|2m|U|542
6IP8|1|2m|C|543
6IP8|1|2m|G|544
6IP8|1|2m|A|545
6IP8|1|2m|G|546
6IP8|1|2m|G|547
6IP8|1|2m|C|548

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3Q

40S ribosomal protein S30