HL_6IP8_095

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCCACUUUAAAUCCUUCCG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|2m|U|566
6IP8|1|2m|C|567
6IP8|1|2m|C|568
6IP8|1|2m|A|569
6IP8|1|2m|C|570
6IP8|1|2m|U|571
6IP8|1|2m|U|572
6IP8|1|2m|U|573
6IP8|1|2m|A|574
6IP8|1|2m|A|575
6IP8|1|2m|A|576
6IP8|1|2m|U|577
6IP8|1|2m|C|578
6IP8|1|2m|C|579
6IP8|1|2m|U|580
6IP8|1|2m|U|581
6IP8|1|2m|C|582
6IP8|1|2m|C|583
6IP8|1|2m|G|584

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3I

40S ribosomal protein S9

Chain 3N

40S ribosomal protein S24