HL_6IP8_101

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_101 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.1347

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6IP8|1|2m|C|994
6IP8|1|2m|G|995
6IP8|1|2m|A|996
6IP8|1|2m|A|997
6IP8|1|2m|A|998
6IP8|1|2m|G|999

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3C

40S ribosomal protein S26

Chain 3K

40S ribosomal protein S13