HL_6IP8_108

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_108 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.1801

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6IP8|1|2m|A|1353
6IP8|1|2m|G|1354
6IP8|1|2m|C|1355
6IP8|1|2m|G|1356
6IP8|1|2m|A|1357
6IP8|1|2m|U|1358

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2n

40S ribosomal protein SA

Chain 3G

40S ribosomal protein S2