HL_6IP8_111
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGUUCAG
- Length
- 7 nucleotides
- Bulged bases
- 6IP8|1|2m|U|1462, 6IP8|1|2m|U|1463
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP8_111 not in the Motif Atlas
- Geometric match to HL_1WZ2_007
- Geometric discrepancy: 0.1565
- The information below is about HL_1WZ2_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
6IP8|1|2m|C|1460
6IP8|1|2m|G|1461
6IP8|1|2m|U|1462
6IP8|1|2m|U|1463
6IP8|1|2m|C|1464
6IP8|1|2m|A|1465
6IP8|1|2m|G|1466
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2y
- 40S ribosomal protein S17
- Chain 3C
- 40S ribosomal protein S26
- Chain 3D
- 40S ribosomal protein S28
- Chain 3F
- Receptor of activated protein C kinase 1
- Chain zz
- Internal ribosome entry site; IRES
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