HL_6IP8_115

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCGGGGUGCCCUGGCGGCCCUG*G

Length

23 nucleotides

Bulged bases

6IP8|1|2m|G|1771, 6IP8|1|2m|C|1773, 6IP8|1|2m|C|1769, 6IP8|1|2m|G|1770, 6IP8|1|2m|G|1771, 6IP8|1|2m|C|1773

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|2m|C|1755
6IP8|1|2m|C|1756
6IP8|1|2m|G|1757
6IP8|1|2m|G|1758
6IP8|1|2m|G|1759
6IP8|1|2m|G|1760
6IP8|1|2m|U|1761
6IP8|1|2m|G|1771
6IP8|1|2m|C|1772
6IP8|1|2m|C|1773
6IP8|1|2m|C|1774
6IP8|1|2m|U|1775
6IP8|1|2m|G|1776
6IP8|1|2m|G|1777
6IP8|1|2m|C|1769
6IP8|1|2m|G|1770
6IP8|1|2m|G|1771
6IP8|1|2m|C|1772
6IP8|1|2m|C|1773
6IP8|1|2m|C|1774
6IP8|1|2m|U|1775
6IP8|1|2m|G|1776
*
6IP8|1|2m|G|1777

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2Q

60S ribosomal protein L24

Chain 3H

40S ribosomal protein S6