HL_6IP8_119
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP8_119 not in the Motif Atlas
- Homologous match to HL_3ZGZ_003
- Geometric discrepancy: 0.167
- The information below is about HL_3ZGZ_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
6IP8|1|zy|G|52
6IP8|1|zy|U|53
6IP8|1|zy|U|54
6IP8|1|zy|C|55
6IP8|1|zy|A|56
6IP8|1|zy|A|57
6IP8|1|zy|A|58
6IP8|1|zy|U|59
6IP8|1|zy|C|60
Current chains
- Chain zy
- P-site tRNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2D
- 60S ribosomal protein L10-like
- Chain 2E
- 60S ribosomal protein L11
- Chain 2i
- 60S ribosomal protein L36a
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