HL_6IP8_121

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUG

Length

4 nucleotides

Bulged bases

6IP8|1|zz|G|233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|zz|C|232
6IP8|1|zz|G|233
6IP8|1|zz|U|234
6IP8|1|zz|G|235

Current chains

Chain zz

HCV-IRES RNA

Nearby chains

Chain 2s

40S ribosomal protein S7

Chain 3K

40S ribosomal protein S13

Chain 3P

40S ribosomal protein S27