HL_6IP8_131

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

6IP8|1|1A|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|A|4473
6IP8|1|1A|A|4474
6IP8|1|1A|G|4475
6IP8|1|1A|C|4476
6IP8|1|1A|A|4477
6IP8|1|1A|G|4478
6IP8|1|1A|A|4479
6IP8|1|1A|A|4480
6IP8|1|1A|U|4481
6IP8|1|1A|U|4482

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2C

60S ribosomal protein L9

Chain 2g

Ubiquitin-60S ribosomal protein L40