HL_6IP8_138
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCCG
- Length
- 40 nucleotides
- Bulged bases
- 6IP8|1|2m|A|1282, 6IP8|1|2m|C|1283, 6IP8|1|2m|G|1285, 6IP8|1|2m|C|1292, 6IP8|1|2m|A|1293, 6IP8|1|2m|G|1294, 6IP8|1|2m|U|1300, 6IP8|1|2m|U|1306, 6IP8|1|2m|U|1314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP8|1|2m|C|1279
6IP8|1|2m|G|1280
6IP8|1|2m|G|1281
6IP8|1|2m|A|1282
6IP8|1|2m|C|1283
6IP8|1|2m|A|1284
6IP8|1|2m|G|1285
6IP8|1|2m|G|1286
6IP8|1|2m|A|1287
6IP8|1|2m|U|1288
6IP8|1|2m|U|1289
6IP8|1|2m|G|1290
6IP8|1|2m|A|1291
6IP8|1|2m|C|1292
6IP8|1|2m|A|1293
6IP8|1|2m|G|1294
6IP8|1|2m|A|1295
6IP8|1|2m|U|1296
6IP8|1|2m|U|1297
6IP8|1|2m|G|1298
6IP8|1|2m|A|1299
6IP8|1|2m|U|1300
6IP8|1|2m|A|1301
6IP8|1|2m|G|1302
6IP8|1|2m|C|1303
6IP8|1|2m|U|1304
6IP8|1|2m|C|1305
6IP8|1|2m|U|1306
6IP8|1|2m|U|1307
6IP8|1|2m|U|1308
6IP8|1|2m|C|1309
6IP8|1|2m|U|1310
6IP8|1|2m|C|1311
6IP8|1|2m|G|1312
6IP8|1|2m|A|1313
6IP8|1|2m|U|1314
6IP8|1|2m|U|1315
6IP8|1|2m|C|1316
6IP8|1|2m|C|1317
6IP8|1|2m|G|1318
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2u
- 40S ribosomal protein S10
- Chain 2w
- 40S ribosomal protein S15
- Chain 3E
- 40S ribosomal protein S29
- Chain 3J
- 40S ribosomal protein S12
- Chain 3R
- Ubiquitin-40S ribosomal protein S27a
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