HL_6JFU_002

3D structure

PDB id

6JFU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGG

Length

3 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6JFU_002 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2442

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6JFU|1|B|C|70
6JFU|1|B|G|71
6JFU|1|B|G|83

Current chains

Chain B

sgRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9