HL_6K3Z_003

3D structure

PDB id

6K3Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of dCas9 in complex with sgRNA and DNA (TGA PAM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6K3Z_003 not in the Motif Atlas

Geometric match to HL_1L9A_002

Geometric discrepancy: 0.1145

The information below is about HL_1L9A_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6K3Z|1|A|U|72
6K3Z|1|A|G|73
6K3Z|1|A|A|74
6K3Z|1|A|A|75
6K3Z|1|A|A|76
6K3Z|1|A|A|77

Current chains

Chain A

RNA (81-MER)

Nearby chains

Chain B

CRISPR-associated endonuclease Cas9