HL_6KE6_009

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6KE6_009 not in the Motif Atlas

Geometric match to HL_3IGI_004

Geometric discrepancy: 0.2958

The information below is about HL_3IGI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6KE6|1|5A|C|360
6KE6|1|5A|G|361
6KE6|1|5A|C|362
6KE6|1|5A|A|363
6KE6|1|5A|A|364
6KE6|1|5A|G|365

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5C

U3 small nucleolar RNA-associated protein 7