HL_6KE6_019

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

6KE6|1|SA|A|400, 6KE6|1|SA|C|402, 6KE6|1|SA|G|403

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6KE6_019 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.5077

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6KE6|1|SA|C|393
6KE6|1|SA|C|394
6KE6|1|SA|U|395
6KE6|1|SA|G|396
6KE6|1|SA|A|397
6KE6|1|SA|G|398
6KE6|1|SA|A|399
6KE6|1|SA|A|400
6KE6|1|SA|A|401
6KE6|1|SA|C|402
6KE6|1|SA|G|403
6KE6|1|SA|G|404

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RA

Ribosome biogenesis protein ENP2

Chain SH

40S ribosomal protein S6-A

Chain SJ

40S ribosomal protein S8-A