HL_6LKQ_007

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_007 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.1099

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6LKQ|1|s|U|296
6LKQ|1|s|G|297
6LKQ|1|s|A|298
6LKQ|1|s|G|299
6LKQ|1|s|A|300
6LKQ|1|s|G|301

Current chains

Chain s

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S4

Chain D

30S ribosomal protein S5

Chain P

30S ribosomal protein S17