6LKQ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6LKQ_001 | 1/s/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_6LKQ_002 | 1/s/82:87 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6LKQ_003 | 1/s/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_6LKQ_004 | 1/s/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
| HL_6LKQ_005 | 1/s/206:213 | No text annotation | ||
| HL_6LKQ_006 | 1/s/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_6LKQ_007 | 1/s/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_6LKQ_008 | 1/s/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_6LKQ_009 | 1/s/342:347 | UNCG | homologous HL_5J7L_009 HL_34617.5 | |
| HL_6LKQ_103 | 1/s/378:385 | GNRA with near cWW | geometric HL_2IL9_007 NA | |
| HL_6LKQ_010 | 1/s/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_6LKQ_011 | 1/s/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_6LKQ_113 | 1/s/460:471 | No text annotation | ||
| HL_6LKQ_013 | 1/s/522:527 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_6LKQ_014 | 1/s/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_6LKQ_015 | 1/s/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_6LKQ_016 | 1/s/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_6LKQ_017 | 1/s/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_6LKQ_018 | 1/s/839:847 | No text annotation | geometric HL_8H9D_001 NA | |
| HL_6LKQ_019 | 1/s/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_6LKQ_020 | 1/s/897:902 | GNRA | homologous HL_5J7L_020 HL_37824.7 | |
| HL_6LKQ_022 | 1/s/1028:1033 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_6LKQ_023 | 1/s/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_6LKQ_024 | 1/s/1089:1096 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
| HL_6LKQ_025 | 1/s/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_6LKQ_026 | 1/s/1165:1171 | GNRA | homologous HL_5J7L_026 HL_93535.1 | |
| HL_6LKQ_027 | 1/s/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
| HL_6LKQ_028 | 1/s/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_6LKQ_029 | 1/s/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_6LKQ_030 | 1/s/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_6LKQ_031 | 1/s/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.7 | |
| HL_6LKQ_032 | 1/t/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_6LKQ_033 | 1/t/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_6LKQ_034 | 1/t/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_6LKQ_106 | 1/t/134:145 | No text annotation | ||
| HL_6LKQ_035 | 1/t/136:143 | No text annotation | ||
| HL_6LKQ_036 | 1/t/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_6LKQ_037 | 1/t/194:201 | No text annotation | homologous HL_7RQB_006 NA | |
| HL_6LKQ_038 | 1/t/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_6LKQ_039 | 1/t/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_6LKQ_040 | 1/t/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_6LKQ_041 | 1/t/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_6LKQ_042 | 1/t/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_6LKQ_043 | 1/t/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_6LKQ_044 | 1/t/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_6LKQ_045 | 1/t/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_6LKQ_046 | 1/t/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_6LKQ_107 | 1/t/543:550 | No text annotation | homologous HL_5J7L_149 HL_09452.1 | |
| HL_6LKQ_048 | 1/t/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.8 | |
| HL_6LKQ_049 | 1/t/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_6LKQ_050 | 1/t/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_6LKQ_051 | 1/t/641:647 | No text annotation | homologous HL_5J7L_153 HL_13529.1 | |
| HL_6LKQ_052 | 1/t/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_6LKQ_054 | 1/t/779:785 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_6LKQ_055 | 1/t/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_6LKQ_057 | 1/t/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.7 | |
| HL_6LKQ_058 | 1/t/978:985 | No text annotation | homologous HL_4WF9_028 HL_42998.2 | |
| HL_6LKQ_059 | 1/t/1064:1074 | No text annotation | ||
| HL_6LKQ_060 | 1/t/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_6LKQ_110 | 1/t/1168:1181 | No text annotation | ||
| HL_6LKQ_062 | 1/t/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.7 | |
| HL_6LKQ_063 | 1/t/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.8 | |
| HL_6LKQ_064 | 1/t/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_6LKQ_065 | 1/t/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_6LKQ_066 | 1/t/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_6LKQ_067 | 1/t/1451:1459 | Mini UNCG | geometric HL_4L8H_001 HL_48778.2 | |
| HL_6LKQ_068 | 1/t/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_6LKQ_069 | 1/t/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
| HL_6LKQ_070 | 1/t/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_6LKQ_071 | 1/t/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6LKQ_072 | 1/t/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_6LKQ_073 | 1/t/1691:1696 | UNCG | geometric HL_5J7L_175 HL_34617.5 | |
| HL_6LKQ_074 | 1/t/1727:1733 | No text annotation | homologous HL_5J7L_214 HL_08100.1 | |
| HL_6LKQ_075 | 1/t/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_6LKQ_076 | 1/t/1777:1787 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_6LKQ_077 | 1/t/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_6LKQ_078 | 1/t/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.7 | |
| HL_6LKQ_079 | 1/t/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_6LKQ_080 | 1/t/1949:1957 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_6LKQ_081 | 1/t/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_6LKQ_083 | 1/t/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_6LKQ_084 | 1/t/2248:2256 | No text annotation | homologous HL_4WF9_049 HL_85367.2 | |
| HL_6LKQ_085 | 1/t/2264:2276 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_6LKQ_111 | 1/t/2304:2312 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_6LKQ_087 | 1/t/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_6LKQ_088 | 1/t/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
| HL_6LKQ_089 | 1/t/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.7 | |
| HL_6LKQ_090 | 1/t/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_6LKQ_091 | 1/t/2471:2479 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_6LKQ_092 | 1/t/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_6LKQ_093 | 1/t/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_6LKQ_094 | 1/t/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_6LKQ_095 | 1/t/2658:2663 | GNRA | homologous HL_5J7L_197 HL_37824.7 | |
| HL_6LKQ_096 | 1/t/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_6LKQ_097 | 1/t/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_6LKQ_112 | 1/t/2795:2801 | Other HL | homologous HL_5J7L_200 HL_08100.1 | |
| HL_6LKQ_099 | 1/t/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_6LKQ_100 | 1/t/2856:2861 | GNRA | homologous HL_5J7L_202 HL_37824.7 | |
| HL_6LKQ_109 | 1/u/34:48 | No text annotation | homologous HL_5J7L_215 HL_97756.2 | |
| HL_6LKQ_101 | 1/u/38:44 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_6LKQ_102 | 1/u/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6LKQ_012 | No text annotation | ||
| HL_6LKQ_104 | No text annotation | ||
| HL_6LKQ_021 | GNRA | ||
| HL_6LKQ_105 | No text annotation | ||
| HL_6LKQ_047 | No text annotation | ||
| HL_6LKQ_053 | No text annotation | ||
| HL_6LKQ_056 | No text annotation | ||
| HL_6LKQ_061 | No text annotation | ||
| HL_6LKQ_082 | No text annotation | ||
| HL_6LKQ_108 | No text annotation | ||
| HL_6LKQ_086 | No text annotation | ||
| HL_6LKQ_098 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6LKQ_001 | 1/s/30:32, 1/s/552:553 | Single bulged G | homologous IL_5J7L_001 IL_00225.13 | |
| IL_6LKQ_002 | 1/s/44:45, 1/s/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.6 | |
| IL_6LKQ_003 | 1/s/47:52, 1/s/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_6LKQ_004 | 1/s/54:56, 1/s/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_6LKQ_005 | 1/s/63:66, 1/s/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_6LKQ_006 | 1/s/67:69, 1/s/99:102 | Minor groove platform with extra cWW | geometric IL_5J7L_006 IL_90351.1 | |
| IL_6LKQ_172 | 1/s/70:73, 1/s/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_6LKQ_008 | 1/s/75:79, 1/s/90:95 | No text annotation | ||
| IL_6LKQ_009 | 1/s/128:131, 1/s/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_6LKQ_010 | 1/s/132:136, 1/s/227:230 | Minor groove platform related | homologous IL_5J7L_010 IL_64231.5 | |
| IL_6LKQ_011 | 1/s/144:146, 1/s/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
| IL_6LKQ_012 | 1/s/147:153, 1/s/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_6LKQ_013 | 1/s/203:206, 1/s/213:214 | Minor groove platform | geometric IL_3RW6_003 IL_95583.2 | |
| IL_6LKQ_014 | 1/s/242:247, 1/s/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_6LKQ_192 | 1/s/249:252, 1/s/274:275 | No text annotation | homologous IL_6CZR_405 NA | |
| IL_6LKQ_016 | 1/s/292:293, 1/s/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_6LKQ_017 | 1/s/367:369, 1/s/392:393 | Single bulged U | geometric IL_5J7L_017 IL_89505.4 | |
| IL_6LKQ_018 | 1/s/371:375, 1/s/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_6LKQ_019 | 1/s/375:376, 1/s/387:389 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_6LKQ_173 | 1/s/409:416, 1/s/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_6LKQ_021 | 1/s/440:442, 1/s/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_6LKQ_022 | 1/s/446:450, 1/s/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 IL_88269.4 | |
| IL_6LKQ_174 | 1/s/446:455, 1/s/477:488 | No text annotation | ||
| IL_6LKQ_023 | 1/s/450:455, 1/s/477:483 | No text annotation | homologous IL_5J7L_023 IL_70801.1 | |
| IL_6LKQ_197 | 1/s/458:459, 1/s/472:474 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_6LKQ_175 | 1/s/504:511, 1/s/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_6LKQ_025 | 1/s/515:521, 1/s/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6LKQ_026 | 1/s/569:575, 1/s/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_6LKQ_027 | 1/s/580:584, 1/s/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_6LKQ_028 | 1/s/594:596, 1/s/644:645 | Major groove platform | geometric IL_5J7L_028 IL_48076.6 | |
| IL_6LKQ_193 | 1/s/597:598, 1/s/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_6LKQ_030 | 1/s/605:612, 1/s/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_6LKQ_031 | 1/s/654:655, 1/s/751:754 | Major groove platform; stack outside cWW | geometric IL_1KUQ_001 IL_50694.7 | |
| IL_6LKQ_032 | 1/s/658:659, 1/s/746:748 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_6LKQ_033 | 1/s/662:666, 1/s/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_6LKQ_034 | 1/s/684:688, 1/s/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_6LKQ_035 | 1/s/774:778, 1/s/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_6LKQ_036 | 1/s/779:783, 1/s/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_6LKQ_037 | 1/s/887:894, 1/s/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_6LKQ_038 | 1/s/922:923, 1/s/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.6 | |
| IL_6LKQ_039 | 1/s/925:927, 1/s/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
| IL_6LKQ_040 | 1/s/933:935, 1/s/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_6LKQ_041 | 1/s/953:984, 1/s/1221:1228 | No text annotation | ||
| IL_6LKQ_042 | 1/s/1048:1050, 1/s/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_6LKQ_043 | 1/s/1052:1056, 1/s/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_6LKQ_044 | 1/s/1057:1058, 1/s/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_6LKQ_045 | 1/s/1060:1061, 1/s/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_6LKQ_046 | 1/s/1061:1063, 1/s/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_6LKQ_194 | 1/s/1123:1128, 1/s/1144:1150 | No text annotation | ||
| IL_6LKQ_048 | 1/s/1129:1133, 1/s/1141:1143 | No text annotation | homologous IL_4LFB_066 NA | |
| IL_6LKQ_049 | 1/s/1158:1161, 1/s/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_6LKQ_050 | 1/s/1247:1253, 1/s/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_6LKQ_051 | 1/s/1255:1258, 1/s/1277:1282 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_6LKQ_052 | 1/s/1259:1263, 1/s/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_6LKQ_053 | 1/s/1303:1308, 1/s/1329:1334 | No text annotation | geometric IL_5J7L_057 IL_85536.2 | |
| IL_6LKQ_054 | 1/s/1399:1401, 1/s/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_6LKQ_055 | 1/s/1401:1404, 1/s/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6LKQ_056 | 1/s/1405:1407, 1/s/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_6LKQ_057 | 1/s/1407:1409, 1/s/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_6LKQ_058 | 1/s/1412:1414, 1/s/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_6LKQ_059 | 1/s/1416:1419, 1/s/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_6LKQ_060 | 1/s/1430:1435, 1/s/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_6LKQ_061 | 1/s/1440:1442, 1/s/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.6 | |
| IL_6LKQ_062 | 1/s/1445:1448, 1/s/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
| IL_6LKQ_063 | 1/t/24:30, 1/t/510:516 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 IL_04021.2 | |
| IL_6LKQ_064 | 1/t/36:37, 1/t/442:444 | Single bulged A | homologous IL_5J7L_246 IL_31462.6 | |
| IL_6LKQ_065 | 1/t/43:44, 1/t/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_6LKQ_066 | 1/t/81:85, 1/t/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_6LKQ_067 | 1/t/183:184, 1/t/212:214 | Single stack bend | homologous IL_5J7L_249 IL_90729.1 | |
| IL_6LKQ_068 | 1/t/188:194, 1/t/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 IL_04346.10 | |
| IL_6LKQ_069 | 1/t/239:245, 1/t/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_6LKQ_070 | 1/t/269:271, 1/t/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_6LKQ_180 | 1/t/274:281, 1/t/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_6LKQ_072 | 1/t/293:295, 1/t/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_6LKQ_073 | 1/t/481:484, 1/t/496:509 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
| IL_6LKQ_074 | 1/t/536:539, 1/t/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_6LKQ_075 | 1/t/564:566, 1/t/575:577 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 IL_07785.1 | |
| IL_6LKQ_076 | 1/t/606:610, 1/t/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_6LKQ_077 | 1/t/672:674, 1/t/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 IL_87907.2 | |
| IL_6LKQ_078 | 1/t/674:678, 1/t/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 IL_54041.2 | |
| IL_6LKQ_079 | 1/t/697:698, 1/t/763:765 | Single bulged A | geometric IL_5J7L_261 IL_31462.6 | |
| IL_6LKQ_080 | 1/t/702:703, 1/t/728:730 | Single bulged G | geometric IL_5J7L_262 IL_00225.13 | |
| IL_6LKQ_081 | 1/t/703:707, 1/t/724:728 | Triple sheared | homologous IL_5J7L_263 IL_50730.2 | |
| IL_6LKQ_082 | 1/t/738:740, 1/t/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_6LKQ_083 | 1/t/775:777, 1/t/787:791 | Multiple bulged bases | geometric IL_7A0S_021 IL_06549.2 | |
| IL_6LKQ_084 | 1/t/844:847, 1/t/933:934 | Other IL | geometric IL_5J7L_267 IL_90729.1 | |
| IL_6LKQ_181 | 1/t/844:848, 1/t/930:934 | No text annotation | homologous IL_5J7L_399 IL_96236.1 | |
| IL_6LKQ_085 | 1/t/847:848, 1/t/930:933 | Stack outside cWW | homologous IL_5J7L_268 IL_56987.1 | |
| IL_6LKQ_086 | 1/t/850:851, 1/t/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_6LKQ_087 | 1/t/856:862, 1/t/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 IL_29198.2 | |
| IL_6LKQ_088 | 1/t/862:863, 1/t/913:915 | Single bulged G | homologous IL_5J7L_271 IL_00225.13 | |
| IL_6LKQ_089 | 1/t/864:868, 1/t/909:912 | C-loop | homologous IL_5J7L_272 IL_26222.2 | |
| IL_6LKQ_090 | 1/t/870:872, 1/t/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_6LKQ_091 | 1/t/874:879, 1/t/898:903 | No text annotation | ||
| IL_6LKQ_182 | 1/t/875:883, 1/t/893:902 | No text annotation | ||
| IL_6LKQ_093 | 1/t/994:996, 1/t/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6LKQ_094 | 1/t/998:1002, 1/t/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
| IL_6LKQ_095 | 1/t/1004:1011, 1/t/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_6LKQ_183 | 1/t/1004:1013, 1/t/1149:1151 | No text annotation | ||
| IL_6LKQ_096 | 1/t/1011:1013, 1/t/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_6LKQ_097 | 1/t/1018:1024, 1/t/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_6LKQ_098 | 1/t/1024:1030, 1/t/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_6LKQ_099 | 1/t/1031:1034, 1/t/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
| IL_6LKQ_100 | 1/t/1038:1041, 1/t/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_6LKQ_184 | 1/t/1043:1051, 1/t/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_6LKQ_185 | 1/t/1054:1062, 1/t/1076:1105 | No text annotation | ||
| IL_6LKQ_102 | 1/t/1059:1063, 1/t/1075:1079 | No text annotation | geometric IL_4V9F_043 NA | |
| IL_6LKQ_103 | 1/t/1196:1198, 1/t/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 IL_42997.3 | |
| IL_6LKQ_104 | 1/t/1202:1206, 1/t/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_6LKQ_105 | 1/t/1208:1215, 1/t/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
| IL_6LKQ_106 | 1/t/1262:1269, 1/t/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_6LKQ_107 | 1/t/1310:1313, 1/t/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_6LKQ_108 | 1/t/1319:1323, 1/t/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_6LKQ_109 | 1/t/1351:1355, 1/t/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_6LKQ_110 | 1/t/1357:1361, 1/t/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_6LKQ_186 | 1/t/1415:1416, 1/t/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_6LKQ_112 | 1/t/1417:1421, 1/t/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_6LKQ_113 | 1/t/1432:1435, 1/t/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_6LKQ_114 | 1/t/1437:1440, 1/t/1551:1555 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
| IL_6LKQ_115 | 1/t/1450:1451, 1/t/1459:1461 | Single bulged U | homologous IL_5J7L_298 IL_89505.4 | |
| IL_6LKQ_116 | 1/t/1468:1471, 1/t/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_6LKQ_117 | 1/t/1474:1478, 1/t/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_6LKQ_195 | 1/t/1481:1482, 1/t/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_6LKQ_119 | 1/t/1489:1491, 1/t/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.6 | |
| IL_6LKQ_120 | 1/t/1526:1529, 1/t/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_6LKQ_121 | 1/t/1651:1656, 1/t/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_6LKQ_122 | 1/t/1663:1665, 1/t/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.2 | |
| IL_6LKQ_123 | 1/t/1666:1669, 1/t/1993:1994 | Major groove platform; stack outside cWW | homologous IL_5J7L_306 IL_50694.7 | |
| IL_6LKQ_188 | 1/t/1666:1674, 1/t/1990:1994 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
| IL_6LKQ_124 | 1/t/1669:1674, 1/t/1990:1993 | Intercalated tWH | geometric IL_5J7L_307 IL_76758.2 | |
| IL_6LKQ_125 | 1/t/1686:1691, 1/t/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 IL_47346.2 | |
| IL_6LKQ_126 | 1/t/1712:1718, 1/t/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_6LKQ_127 | 1/t/1720:1724, 1/t/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_6LKQ_128 | 1/t/1770:1771, 1/t/1980:1982 | Single bulged A | homologous IL_5J7L_312 IL_31462.6 | |
| IL_6LKQ_129 | 1/t/1798:1804, 1/t/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_6LKQ_130 | 1/t/1837:1840, 1/t/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_6LKQ_131 | 1/t/1841:1842, 1/t/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_6LKQ_132 | 1/t/1846:1849, 1/t/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_072 IL_68140.4 | |
| IL_6LKQ_189 | 1/t/1851:1860, 1/t/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_6LKQ_133 | 1/t/1864:1867, 1/t/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_6LKQ_134 | 1/t/1933:1934, 1/t/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.4 | |
| IL_6LKQ_135 | 1/t/1934:1945, 1/t/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_6LKQ_136 | 1/t/2050:2052, 1/t/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_6LKQ_137 | 1/t/2054:2056, 1/t/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_6LKQ_138 | 1/t/2067:2069, 1/t/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
| IL_6LKQ_139 | 1/t/2070:2071, 1/t/2438:2441 | Minor groove platform | homologous IL_7A0S_076 IL_51454.3 | |
| IL_6LKQ_140 | 1/t/2081:2083, 1/t/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_6LKQ_141 | 1/t/2085:2087, 1/t/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
| IL_6LKQ_196 | 1/t/2103:2105, 1/t/2184:2186 | No text annotation | ||
| IL_6LKQ_143 | 1/t/2202:2204, 1/t/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_6LKQ_144 | 1/t/2350:2353, 1/t/2364:2367 | Double sheared | homologous IL_5J7L_333 IL_09705.15 | |
| IL_6LKQ_145 | 1/t/2401:2403, 1/t/2414:2415 | No text annotation | ||
| IL_6LKQ_146 | 1/t/2453:2454, 1/t/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
| IL_6LKQ_147 | 1/t/2454:2455, 1/t/2496:2498 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_6LKQ_148 | 1/t/2457:2459, 1/t/2493:2494 | Major groove platform | homologous IL_7A0S_085 IL_48076.6 | |
| IL_6LKQ_149 | 1/t/2459:2461, 1/t/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7A0S_086 IL_51387.2 | |
| IL_6LKQ_150 | 1/t/2466:2470, 1/t/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_6LKQ_151 | 1/t/2507:2508, 1/t/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_6LKQ_152 | 1/t/2510:2512, 1/t/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 IL_07785.1 | |
| IL_6LKQ_153 | 1/t/2512:2513, 1/t/2571:2574 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
| IL_6LKQ_154 | 1/t/2522:2523, 1/t/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_6LKQ_155 | 1/t/2591:2592, 1/t/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.6 | |
| IL_6LKQ_156 | 1/t/2636:2640, 1/t/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_6LKQ_157 | 1/t/2652:2658, 1/t/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 IL_16458.4 | |
| IL_6LKQ_158 | 1/t/2680:2684, 1/t/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_6LKQ_159 | 1/t/2687:2691, 1/t/2718:2722 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
| IL_6LKQ_160 | 1/t/2695:2696, 1/t/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_6LKQ_161 | 1/t/2737:2742, 1/t/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_6LKQ_162 | 1/t/2806:2811, 1/t/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_6LKQ_163 | 1/t/2838:2839, 1/t/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_6LKQ_164 | 1/t/2843:2846, 1/t/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_6LKQ_165 | 1/t/2847:2852, 1/t/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_6LKQ_166 | 1/u/17:18, 1/u/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.6 | |
| IL_6LKQ_167 | 1/u/23:28, 1/u/56:60 | No text annotation | geometric IL_5J7L_356 IL_18472.4 | |
| IL_6LKQ_191 | 1/u/23:31, 1/u/51:60 | No text annotation | ||
| IL_6LKQ_168 | 1/u/28:31, 1/u/51:56 | No text annotation | ||
| IL_6LKQ_169 | 1/u/34:38, 1/u/44:48 | Symmetric double minor groove platform | geometric IL_5J7L_358 IL_58103.11 | |
| IL_6LKQ_170 | 1/u/71:79, 1/u/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6LKQ_171 | No text annotation | ||
| IL_6LKQ_007 | No text annotation | ||
| IL_6LKQ_015 | No text annotation | ||
| IL_6LKQ_020 | No text annotation | ||
| IL_6LKQ_024 | No text annotation | ||
| IL_6LKQ_029 | No text annotation | ||
| IL_6LKQ_176 | No text annotation | ||
| IL_6LKQ_177 | No text annotation | ||
| IL_6LKQ_047 | No text annotation | ||
| IL_6LKQ_178 | No text annotation | ||
| IL_6LKQ_179 | No text annotation | ||
| IL_6LKQ_071 | No text annotation | ||
| IL_6LKQ_092 | No text annotation | ||
| IL_6LKQ_101 | No text annotation | ||
| IL_6LKQ_111 | No text annotation | ||
| IL_6LKQ_118 | No text annotation | ||
| IL_6LKQ_187 | Isolated non-canonical cWW pair | ||
| IL_6LKQ_190 | Triple sheared related | ||
| IL_6LKQ_142 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6LKQ_001 | 1/s/46:47, 1/s/361:367, 1/s/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_6LKQ_025 | 1/s/46:52, 1/s/359:367, 1/s/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_6LKQ_002 | 1/s/586:588, 1/s/651:654, 1/s/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_6LKQ_026 | 1/s/586:588, 1/s/651:655, 1/s/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_6LKQ_027 | 1/s/672:677, 1/s/713:725, 1/s/732:734 | No text annotation | ||
| J3_6LKQ_003 | 1/s/826:829, 1/s/857:861, 1/s/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_6LKQ_028 | 1/s/936:939, 1/s/1344:1352, 1/s/1370:1379 | No text annotation | ||
| J3_6LKQ_029 | 1/s/943:947, 1/s/1234:1237, 1/s/1337:1340 | No text annotation | ||
| J3_6LKQ_005 | 1/s/990:999, 1/s/1041:1047, 1/s/1210:1215 | No text annotation | ||
| J3_6LKQ_007 | 1/s/1063:1068, 1/s/1107:1113, 1/s/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_6LKQ_008 | 1/s/1073:1074, 1/s/1083:1087, 1/s/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_6LKQ_009 | 1/s/1116:1118, 1/s/1155:1158, 1/s/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_6LKQ_030 | 1/s/1116:1118, 1/s/1155:1161, 1/s/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_6LKQ_010 | 1/s/1237:1241, 1/s/1296:1303, 1/s/1334:1337 | No text annotation | geometric J3_5J7L_011 J3_37047.6 | |
| J3_6LKQ_038 | 1/s/1237:1241, 1/s/1296:1308, 1/s/1329:1337 | No text annotation | ||
| J3_6LKQ_011 | 1/t/30:31, 1/t/474:481, 1/t/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_6LKQ_032 | 1/t/30:31, 1/t/474:484, 1/t/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_6LKQ_033 | 1/t/32:35, 1/t/445:461, 1/t/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_6LKQ_012 | 1/t/56:57, 1/t/70:76, 1/t/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_6LKQ_034 | 1/t/297:301, 1/t/316:325, 1/t/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J3_6LKQ_013 | 1/t/683:689, 1/t/773:775, 1/t/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_6LKQ_014 | 1/t/698:700, 1/t/732:736, 1/t/760:763 | No text annotation | homologous J3_5J7L_039 J3_44724.7 | |
| J3_6LKQ_015 | 1/t/1055:1059, 1/t/1079:1090, 1/t/1101:1104 | No text annotation | ||
| J3_6LKQ_016 | 1/t/1298:1303, 1/t/1625:1627, 1/t/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_6LKQ_017 | 1/t/1306:1309, 1/t/1605:1611, 1/t/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_6LKQ_018 | 1/t/1344:1349, 1/t/1382:1385, 1/t/1402:1403 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_6LKQ_035 | 1/t/1424:1429, 1/t/1564:1565, 1/t/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_6LKQ_019 | 1/t/2091:2093, 1/t/2196:2200, 1/t/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_6LKQ_036 | 1/t/2282:2284, 1/t/2384:2395, 1/t/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_6LKQ_020 | 1/t/2295:2299, 1/t/2317:2323, 1/t/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_6LKQ_021 | 1/t/2517:2520, 1/t/2545:2547, 1/t/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_6LKQ_022 | 1/t/2789:2791, 1/t/2805:2806, 1/t/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_6LKQ_023 | 1/t/2812:2815, 1/t/2831:2836, 1/t/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_6LKQ_024 | 1/u/10:16, 1/u/68:70, 1/u/106:110 | No text annotation | homologous J3_7A0S_014 NA | |
| J4_6LKQ_001 | 1/s/115:122, 1/s/239:240, 1/s/286:289, 1/s/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_6LKQ_015 | 1/s/142:144, 1/s/178:184, 1/s/193:198, 1/s/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J4_6LKQ_003 | 1/s/575:577, 1/s/764:769, 1/s/810:821, 1/s/879:880 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J4_6LKQ_004 | 1/t/268:269, 1/t/370:375, 1/t/399:406, 1/t/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_6LKQ_005 | 1/t/297:301, 1/t/316:319, 1/t/323:325, 1/t/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_6LKQ_006 | 1/t/601:604, 1/t/624:628, 1/t/635:638, 1/t/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_6LKQ_007 | 1/t/1270:1276, 1/t/1294:1295, 1/t/1645:1648, 1/t/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_6LKQ_008 | 1/t/1310:1314, 1/t/1338:1343, 1/t/1404:1405, 1/t/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_6LKQ_009 | 1/t/1313:1314, 1/t/1338:1343, 1/t/1404:1405, 1/t/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_6LKQ_010 | 1/t/1444:1445, 1/t/1466:1467, 1/t/1525:1526, 1/t/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_6LKQ_011 | 1/t/1772:1776, 1/t/1788:1792, 1/t/1827:1830, 1/t/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_6LKQ_012 | 1/t/1833:1835, 1/t/1905:1906, 1/t/1924:1933, 1/t/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_6LKQ_013 | 1/t/2285:2289, 1/t/2343:2347, 1/t/2370:2372, 1/t/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_6LKQ_014 | 1/t/2643:2646, 1/t/2674:2676, 1/t/2731:2735, 1/t/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J5_6LKQ_001 | 1/s/36:39, 1/s/403:406, 1/s/436:440, 1/s/497:500, 1/s/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_6LKQ_002 | 1/s/36:39, 1/s/403:406, 1/s/436:442, 1/s/492:500, 1/s/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_6LKQ_003 | 1/s/58:61, 1/s/106:113, 1/s/314:316, 1/s/337:339, 1/s/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J5_6LKQ_004 | 1/t/47:54, 1/t/116:121, 1/t/130:131, 1/t/148:150, 1/t/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_6LKQ_005 | 1/t/531:533, 1/t/560:564, 1/t/577:579, 1/t/1261:1262, 1/t/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_6LKQ_006 | 1/t/584:589, 1/t/668:671, 1/t/809:812, 1/t/1195:1196, 1/t/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_6LKQ_007 | 1/t/1674:1682, 1/t/1706:1707, 1/t/1751:1752, 1/t/1756:1764, 1/t/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_6LKQ_008 | 1/t/2057:2064, 1/t/2446:2453, 1/t/2500:2506, 1/t/2583:2588, 1/t/2606:2611 | No text annotation | ||
| J5_6LKQ_009 | 1/t/2074:2077, 1/t/2243:2246, 1/t/2258:2259, 1/t/2281:2282, 1/t/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J6_6LKQ_001 | 1/t/45:46, 1/t/179:183, 1/t/214:224, 1/t/231:235, 1/t/262:266, 1/t/426:433 | No text annotation | ||
| J6_6LKQ_002 | 1/t/2074:2077, 1/t/2243:2246, 1/t/2258:2259, 1/t/2281:2284, 1/t/2384:2395, 1/t/2421:2435 | No text annotation | ||
| J7_6LKQ_001 | 1/t/8:15, 1/t/525:531, 1/t/2018:2023, 1/t/2040:2043, 1/t/2625:2630, 1/t/2788:2789, 1/t/2894:2895 | No text annotation | ||
| J7_6LKQ_002 | 1/t/817:822, 1/t/835:838, 1/t/940:946, 1/t/971:976, 1/t/987:991, 1/t/1163:1164, 1/t/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6LKQ_004 | No text annotation | ||
| J3_6LKQ_006 | No text annotation | ||
| J3_6LKQ_037 | No text annotation | ||
| J3_6LKQ_031 | No text annotation | ||
| J4_6LKQ_002 | No text annotation |
Coloring options: