RNA 3D Hub //

6LKQ Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6LKQ_0011/s/12:22No text annotation
homologous
HL_5J7L_001
NA
HL_6LKQ_0021/s/82:87No text annotation
geometric
HL_4V88_198
NA
HL_6LKQ_0031/s/158:163GNRA
homologous
HL_5J7L_003
NA
HL_6LKQ_0041/s/186:191GNRA
homologous
HL_5J7L_004
NA
HL_6LKQ_0051/s/206:213No text annotation
HL_6LKQ_0061/s/259:267GNRA related
homologous
HL_5J7L_006
NA
HL_6LKQ_0071/s/296:301GNRA
homologous
HL_4LFB_007
HL_34789.2
HL_6LKQ_0081/s/320:333No text annotation
homologous
HL_4LFB_008
HL_39665.1
HL_6LKQ_0091/s/342:347UNCG
homologous
HL_5J7L_009
NA
HL_6LKQ_1031/s/378:385GNRA with extra near cWW
geometric
HL_2IL9_007
NA
HL_6LKQ_0101/s/379:384GNRA
homologous
HL_5J7L_010
NA
HL_6LKQ_0111/s/419:424UNCG
homologous
HL_4LFB_011
HL_61337.2
HL_6LKQ_1131/s/460:471No text annotation
geometric
HL_9G4P_001
HL_38491.2
HL_6LKQ_0131/s/522:527No text annotation
geometric
HL_5J7L_143
NA
HL_6LKQ_0141/s/617:623GNRA-like with tWH
homologous
HL_5J7L_014
NA
HL_6LKQ_0151/s/689:698No text annotation
homologous
HL_4LFB_015
HL_38491.2
HL_6LKQ_0161/s/726:731GNRA
homologous
HL_5J7L_016
NA
HL_6LKQ_0171/s/786:796No text annotation
homologous
HL_4LFB_017
HL_38491.2
HL_6LKQ_0181/s/839:847No text annotation
geometric
HL_8H9D_001
NA
HL_6LKQ_0191/s/862:867GNRA
homologous
HL_4LFB_019
HL_34789.2
HL_6LKQ_0201/s/897:902GNRA
homologous
HL_5J7L_020
NA
HL_6LKQ_0221/s/1028:1033No text annotation
geometric
HL_4V9F_003
HL_75660.7
HL_6LKQ_0231/s/1076:1081GNRA
homologous
HL_5J7L_023
NA
HL_6LKQ_0241/s/1089:1096T-loop related
homologous
HL_5J7L_024
NA
HL_6LKQ_0251/s/1134:1140No text annotation
homologous
HL_6CZR_097
NA
HL_6LKQ_0261/s/1165:1171GNRA
homologous
HL_5J7L_026
NA
HL_6LKQ_0271/s/1265:1270GNRA
homologous
HL_5J7L_027
NA
HL_6LKQ_0281/s/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_93658.1
HL_6LKQ_0291/s/1356:1366No text annotation
homologous
HL_4LFB_030
HL_86432.1
HL_6LKQ_0301/s/1449:1454UNCG
homologous
HL_5J7L_030
NA
HL_6LKQ_0311/s/1515:1520GNRA
homologous
HL_4LFB_032
HL_34789.2
HL_6LKQ_0321/t/59:68No text annotation
homologous
HL_5J7L_134
NA
HL_6LKQ_0331/t/87:95No text annotation
homologous
HL_5J7L_135
NA
HL_6LKQ_0341/t/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.7
HL_6LKQ_1061/t/134:145No text annotation
HL_6LKQ_0351/t/136:143No text annotation
HL_6LKQ_0361/t/158:168No text annotation
homologous
HL_5J7L_138
NA
HL_6LKQ_0371/t/194:201No text annotation
homologous
HL_7RQB_006
NA
HL_6LKQ_0381/t/225:230No text annotation
homologous
HL_5J7L_140
NA
HL_6LKQ_0391/t/246:252No text annotation
homologous
HL_5J7L_141
NA
HL_6LKQ_0401/t/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
NA
HL_6LKQ_0411/t/319:323No text annotation
homologous
HL_5J7L_143
NA
HL_6LKQ_0421/t/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_6LKQ_0431/t/382:392No text annotation
homologous
HL_5J7L_145
NA
HL_6LKQ_0441/t/410:417Pseudoknot geometry
homologous
HL_5J7L_146
NA
HL_6LKQ_0451/t/462:467GNRA
homologous
HL_7RQB_015
NA
HL_6LKQ_0461/t/487:493GNRA
homologous
HL_5J7L_148
NA
HL_6LKQ_1071/t/543:550No text annotation
homologous
HL_5J7L_149
NA
HL_6LKQ_0481/t/566:575T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
NA
HL_6LKQ_0491/t/611:617No text annotation
homologous
HL_5J7L_151
NA
HL_6LKQ_0501/t/629:634GNRA
homologous
HL_5J7L_152
NA
HL_6LKQ_0511/t/641:647No text annotation
homologous
HL_5J7L_153
NA
HL_6LKQ_0521/t/712:719GNRA wlth tandem sheared
homologous
HL_5J7L_154
NA
HL_6LKQ_0541/t/779:785UNCG variation
homologous
HL_7A0S_023
HL_51020.2
HL_6LKQ_0551/t/826:831No text annotation
homologous
HL_5J7L_157
NA
HL_6LKQ_0571/t/955:962GNRA
homologous
HL_4WF9_027
HL_34789.2
HL_6LKQ_0581/t/978:985No text annotation
homologous
HL_4WF9_028
HL_47171.1
HL_6LKQ_0591/t/1064:1074No text annotation
HL_6LKQ_0601/t/1092:1099GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_98423.2
HL_6LKQ_1101/t/1168:1181No text annotation
HL_6LKQ_0621/t/1222:1227GNRA
homologous
HL_5J7L_164
NA
HL_6LKQ_0631/t/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
NA
HL_6LKQ_0641/t/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_6LKQ_0651/t/1363:1368GNRA
homologous
HL_7RQB_035
NA
HL_6LKQ_0661/t/1389:1398No text annotation
homologous
HL_5J7L_168
NA
HL_6LKQ_0671/t/1451:1459Mini UNCG
geometric
HL_4L8H_001
HL_90436.2
HL_6LKQ_0681/t/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
NA
HL_6LKQ_0691/t/1533:1538UNCG
homologous
HL_5J7L_171
NA
HL_6LKQ_0701/t/1565:1568Mini UNCG
homologous
HL_5J7L_172
NA
HL_6LKQ_0711/t/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_6LKQ_0721/t/1630:1636GNRA
homologous
HL_5J7L_174
NA
HL_6LKQ_0731/t/1691:1696UNCG
geometric
HL_5J7L_175
NA
HL_6LKQ_0741/t/1727:1733No text annotation
homologous
HL_5J7L_214
NA
HL_6LKQ_0751/t/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_6LKQ_0761/t/1777:1787No text annotation
homologous
HL_5J7L_178
NA
HL_6LKQ_0771/t/1806:1811GNRA related
homologous
HL_5J7L_179
NA
HL_6LKQ_0781/t/1868:1873GNRA variation
homologous
HL_5J7L_180
NA
HL_6LKQ_0791/t/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_6LKQ_0801/t/1949:1957No text annotation
homologous
HL_5J7L_182
NA
HL_6LKQ_0811/t/2027:2036No text annotation
homologous
HL_7RQB_050
NA
HL_6LKQ_0831/t/2209:2215No text annotation
homologous
HL_5J7L_185
NA
HL_6LKQ_0841/t/2248:2256No text annotation
homologous
HL_4WF9_049
HL_11974.2
HL_6LKQ_0851/t/2264:2276No text annotation
homologous
HL_5J7L_187
NA
HL_6LKQ_1111/t/2304:2312No text annotation
homologous
HL_5J7L_219
NA
HL_6LKQ_0871/t/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
NA
HL_6LKQ_0881/t/2356:2361GNRA
homologous
HL_5J7L_190
NA
HL_6LKQ_0891/t/2374:2379GNRA
homologous
HL_5J7L_191
NA
HL_6LKQ_0901/t/2404:2413No text annotation
homologous
HL_5J7L_192
NA
HL_6LKQ_0911/t/2471:2479No text annotation
homologous
HL_5J7L_193
NA
HL_6LKQ_0921/t/2528:2535No text annotation
homologous
HL_7RQB_061
NA
HL_6LKQ_0931/t/2551:2557No text annotation
homologous
HL_4WF9_058
HL_48677.1
HL_6LKQ_0941/t/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_6LKQ_0951/t/2658:2663GNRA
homologous
HL_5J7L_197
NA
HL_6LKQ_0961/t/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
NA
HL_6LKQ_0971/t/2745:2759No text annotation
homologous
HL_5J7L_199
NA
HL_6LKQ_1121/t/2795:2801UNCG variation
homologous
HL_5J7L_200
NA
HL_6LKQ_0991/t/2819:2827No text annotation
homologous
HL_5J7L_201
NA
HL_6LKQ_1001/t/2856:2861GNRA
homologous
HL_5J7L_202
NA
HL_6LKQ_1091/u/34:48No text annotation
homologous
HL_5J7L_215
NA
HL_6LKQ_1011/u/38:44No text annotation
homologous
HL_7RQB_070
NA
HL_6LKQ_1021/u/86:90Mini UNCG
homologous
HL_5J7L_204
NA

Problematic loops

#loop idProblemSequence
HL_6LKQ_012No text annotation
HL_6LKQ_104No text annotation
HL_6LKQ_021GNRA
HL_6LKQ_105No text annotation
HL_6LKQ_047No text annotation
HL_6LKQ_053No text annotation
HL_6LKQ_056No text annotation
HL_6LKQ_061No text annotation
HL_6LKQ_082No text annotation
HL_6LKQ_108No text annotation
HL_6LKQ_086No text annotation
HL_6LKQ_098No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6LKQ_0011/s/30:32,
1/s/552:553		Single bulged G
homologous
IL_5J7L_001
NA
IL_6LKQ_0021/s/44:45,
1/s/396:398		Single bulged A
homologous
IL_4LFB_002
IL_14190.2
IL_6LKQ_0031/s/47:52,
1/s/359:361		No text annotation
geometric
IL_5J7L_003
NA
IL_6LKQ_0041/s/54:56,
1/s/356:357		Minor groove platform
homologous
IL_4LFB_004
IL_34520.2
IL_6LKQ_0051/s/63:66,
1/s/103:104		Multiple bulged bases
homologous
IL_4LFB_005
IL_71421.2
IL_6LKQ_0061/s/67:69,
1/s/99:102		Minor groove platform with extra cWW
geometric
IL_5J7L_006
NA
IL_6LKQ_1721/s/70:73,
1/s/97:98		Minor groove platform
homologous
IL_5J7L_007
NA
IL_6LKQ_0081/s/75:79,
1/s/90:95		No text annotation
IL_6LKQ_0091/s/128:131,
1/s/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
NA
IL_6LKQ_0101/s/132:136,
1/s/227:230		Minor groove platform related
homologous
IL_5J7L_010
NA
IL_6LKQ_0111/s/144:146,
1/s/176:178		Isolated cWH basepair
homologous
IL_5J7L_011
NA
IL_6LKQ_0121/s/147:153,
1/s/168:175		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
NA
IL_6LKQ_0131/s/203:206,
1/s/213:214		Minor groove platform
geometric
IL_3RW6_003
IL_24264.1
IL_6LKQ_0141/s/242:247,
1/s/277:284		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
NA
IL_6LKQ_1921/s/249:252,
1/s/274:275		No text annotation
homologous
IL_6CZR_405
NA
IL_6LKQ_0161/s/292:293,
1/s/304:308		C-loop
homologous
IL_4LFB_013
IL_06671.1
IL_6LKQ_0171/s/367:369,
1/s/392:393		Single bulged U
geometric
IL_5J7L_017
NA
IL_6LKQ_0181/s/371:375,
1/s/389:390		C-loop
homologous
IL_5J7L_018
NA
IL_6LKQ_0191/s/375:376,
1/s/387:389		Single bulged G
geometric
IL_5J7L_019
NA
IL_6LKQ_1731/s/409:416,
1/s/427:433		No text annotation
homologous
IL_4LFB_017
IL_62329.1
IL_6LKQ_0211/s/440:442,
1/s/492:497		No text annotation
homologous
IL_5J7L_021
NA
IL_6LKQ_0221/s/446:450,
1/s/483:488		tSH-tHW-tWW
geometric
IL_5J7L_022
NA
IL_6LKQ_1741/s/446:455,
1/s/477:488		No text annotation
IL_6LKQ_0231/s/450:455,
1/s/477:483		No text annotation
homologous
IL_5J7L_023
NA
IL_6LKQ_1971/s/458:459,
1/s/472:474		Single stack bend
geometric
IL_4LFB_041
IL_15011.2
IL_6LKQ_1751/s/504:511,
1/s/540:541		SSU/LSU pseudoknot
homologous
IL_5J7L_024
NA
IL_6LKQ_0251/s/515:521,
1/s/528:536		Kink-turn related
geometric
IL_4V88_415
NA
IL_6LKQ_0261/s/569:575,
1/s/880:881		No text annotation
homologous
IL_4LFB_022
IL_20847.1
IL_6LKQ_0271/s/580:584,
1/s/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_6LKQ_0281/s/594:596,
1/s/644:645		Major groove platform
geometric
IL_5J7L_028
NA
IL_6LKQ_1931/s/597:598,
1/s/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_73108.2
IL_6LKQ_0301/s/605:612,
1/s/628:633		No text annotation
homologous
IL_5J7L_030
NA
IL_6LKQ_0311/s/654:655,
1/s/751:754		Major groove platform; stack outside cWW
geometric
IL_1KUQ_001
IL_74641.2
IL_6LKQ_0321/s/658:659,
1/s/746:748		Single stack bend
homologous
IL_5J7L_032
NA
IL_6LKQ_0331/s/662:666,
1/s/740:743		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
NA
IL_6LKQ_0341/s/684:688,
1/s/699:706		Kink-turn
homologous
IL_5J7L_035
NA
IL_6LKQ_0351/s/774:778,
1/s/804:805		Left turn
homologous
IL_5J7L_036
NA
IL_6LKQ_0361/s/779:783,
1/s/799:803		tSH-tHW-tHS
homologous
IL_4LFB_033
IL_05821.1
IL_6LKQ_0371/s/887:894,
1/s/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA
IL_6LKQ_0381/s/922:923,
1/s/1393:1395		Single bulged A
homologous
IL_5J7L_039
NA
IL_6LKQ_0391/s/925:927,
1/s/1390:1391		Single bulged G
homologous
IL_5J7L_040
NA
IL_6LKQ_0401/s/933:935,
1/s/1380:1384		Minor groove platform
homologous
IL_5J7L_041
NA
IL_6LKQ_0411/s/953:984,
1/s/1221:1228		No text annotation
IL_6LKQ_0421/s/1048:1050,
1/s/1208:1209		Single bulged U
homologous
IL_5J7L_046
NA
IL_6LKQ_0431/s/1052:1056,
1/s/1204:1206		Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.1
IL_6LKQ_0441/s/1057:1058,
1/s/1199:1203		Minor groove platform
homologous
IL_5J7L_048
NA
IL_6LKQ_0451/s/1060:1061,
1/s/1195:1197		Single bulged U
homologous
IL_4LFB_046
IL_97561.2
IL_6LKQ_0461/s/1061:1063,
1/s/1193:1195		Isolated non-canonical cWW pair
geometric
IL_5J7L_050
NA
IL_6LKQ_1941/s/1123:1128,
1/s/1144:1150		No text annotation
IL_6LKQ_0481/s/1129:1133,
1/s/1141:1143		No text annotation
homologous
IL_4LFB_066
NA
IL_6LKQ_0491/s/1158:1161,
1/s/1175:1181		No text annotation
geometric
IL_5J7L_053
NA
IL_6LKQ_0501/s/1247:1253,
1/s/1284:1290		No text annotation
homologous
IL_5J7L_054
NA
IL_6LKQ_0511/s/1255:1258,
1/s/1277:1282		180 degree turn
homologous
IL_6CZR_161
NA
IL_6LKQ_0521/s/1259:1263,
1/s/1272:1276		Double sheared with non-canonical cWW
homologous
IL_5J7L_056
NA
IL_6LKQ_0531/s/1303:1308,
1/s/1329:1334		No text annotation
geometric
IL_5J7L_057
NA
IL_6LKQ_0541/s/1399:1401,
1/s/1501:1504		No text annotation
homologous
IL_5J7L_058
NA
IL_6LKQ_0551/s/1401:1404,
1/s/1497:1501		No text annotation
geometric
IL_4V88_464
NA
IL_6LKQ_0561/s/1405:1407,
1/s/1494:1496		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_6LKQ_0571/s/1407:1409,
1/s/1491:1494		Decoding loop related
geometric
IL_3C3Z_002
IL_53541.1
IL_6LKQ_0581/s/1412:1414,
1/s/1486:1488		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
NA
IL_6LKQ_0591/s/1416:1419,
1/s/1481:1484		Double sheared
homologous
IL_5J7L_062
NA
IL_6LKQ_0601/s/1430:1435,
1/s/1466:1470		Triple sheared related
homologous
IL_5J7L_063
NA
IL_6LKQ_0611/s/1440:1442,
1/s/1460:1461		Single bulged A
homologous
IL_5J7L_064
NA
IL_6LKQ_0621/s/1445:1448,
1/s/1455:1457		No text annotation
homologous
IL_5J7L_065
NA
IL_6LKQ_0631/t/24:30,
1/t/510:516		Triple sheared with non-canonical cWW
geometric
IL_5J7L_245
NA
IL_6LKQ_0641/t/36:37,
1/t/442:444		Single bulged A
homologous
IL_5J7L_246
NA
IL_6LKQ_0651/t/43:44,
1/t/434:436		Minor groove platform
homologous
IL_5J7L_247
NA
IL_6LKQ_0661/t/81:85,
1/t/97:105		No text annotation
homologous
IL_5J7L_248
NA
IL_6LKQ_0671/t/183:184,
1/t/212:214		Single stack bend
homologous
IL_5J7L_249
NA
IL_6LKQ_0681/t/188:194,
1/t/201:208		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_250
NA
IL_6LKQ_0691/t/239:245,
1/t/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
NA
IL_6LKQ_0701/t/269:271,
1/t/366:370		No text annotation
homologous
IL_5J7L_252
NA
IL_6LKQ_1801/t/274:281,
1/t/359:363		No text annotation
homologous
IL_5J7L_253
NA
IL_6LKQ_0721/t/293:295,
1/t/343:347		No text annotation
homologous
IL_5J7L_254
NA
IL_6LKQ_0731/t/481:484,
1/t/496:509		No text annotation
geometric
IL_5J7L_255
NA
IL_6LKQ_0741/t/536:539,
1/t/554:557		Double sheared
homologous
IL_5J7L_256
NA
IL_6LKQ_0751/t/564:566,
1/t/575:577		Isolated non-canonical cWW pair
geometric
IL_5J7L_257
NA
IL_6LKQ_0761/t/606:610,
1/t/618:622		AAA cross-strand stack
homologous
IL_5J7L_258
NA
IL_6LKQ_0771/t/672:674,
1/t/806:808		Isolated non-canonical cWW pair
homologous
IL_5J7L_259
NA
IL_6LKQ_0781/t/674:678,
1/t/799:806		tHW-tHW cross-strand stack
geometric
IL_5J7L_260
NA
IL_6LKQ_0791/t/697:698,
1/t/763:765		Single bulged A
geometric
IL_5J7L_261
NA
IL_6LKQ_0801/t/702:703,
1/t/728:730		Single bulged G
geometric
IL_5J7L_262
NA
IL_6LKQ_0811/t/703:707,
1/t/724:728		Triple sheared
homologous
IL_5J7L_263
NA
IL_6LKQ_0821/t/738:740,
1/t/757:758		Major groove platform
homologous
IL_5J7L_264
NA
IL_6LKQ_0831/t/775:777,
1/t/787:791		Multiple bulged bases
geometric
IL_7A0S_021
IL_89509.1
IL_6LKQ_0841/t/844:847,
1/t/933:934		90 degree turn
geometric
IL_5J7L_267
NA
IL_6LKQ_1811/t/844:848,
1/t/930:934		No text annotation
homologous
IL_5J7L_399
NA
IL_6LKQ_0851/t/847:848,
1/t/930:933		Stack outside cWW
homologous
IL_5J7L_268
NA
IL_6LKQ_0861/t/850:851,
1/t/926:928		Single stack bend
homologous
IL_5J7L_269
NA
IL_6LKQ_0871/t/856:862,
1/t/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
NA
IL_6LKQ_0881/t/862:863,
1/t/913:915		Single bulged G
homologous
IL_5J7L_271
NA
IL_6LKQ_0891/t/864:868,
1/t/909:912		C-loop with bulged stacked A's
homologous
IL_5J7L_272
NA
IL_6LKQ_0901/t/870:872,
1/t/905:907		Isolated non-canonical cWW pair
homologous
IL_5J7L_273
NA
IL_6LKQ_0911/t/874:879,
1/t/898:903		No text annotation
IL_6LKQ_1821/t/875:883,
1/t/893:902		No text annotation
IL_6LKQ_0931/t/994:996,
1/t/1159:1160		Single bulged C
homologous
IL_7RQB_035
NA
IL_6LKQ_0941/t/998:1002,
1/t/1153:1157		UAA/GAN
homologous
IL_5J7L_277
NA
IL_6LKQ_0951/t/1004:1011,
1/t/1150:1151		SSU/LSU pseudoknot
geometric
IL_5J7L_278
NA
IL_6LKQ_1831/t/1004:1013,
1/t/1149:1151		No text annotation
IL_6LKQ_0961/t/1011:1013,
1/t/1149:1150		Single bulged U
homologous
IL_5J7L_279
NA
IL_6LKQ_0971/t/1018:1024,
1/t/1140:1144		Kink-turn related
homologous
IL_4WF9_039
IL_57188.6
IL_6LKQ_0981/t/1024:1030,
1/t/1124:1140		No text annotation
geometric
IL_5J7L_281
NA
IL_6LKQ_0991/t/1031:1034,
1/t/1121:1123		Isolated non-canonical cWW pair
homologous
IL_5J7L_282
NA
IL_6LKQ_1001/t/1038:1041,
1/t/1114:1117		Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
NA
IL_6LKQ_1841/t/1043:1051,
1/t/1108:1112		Kink-turn
homologous
IL_5J7L_284
NA
IL_6LKQ_1851/t/1054:1062,
1/t/1076:1105		No text annotation
IL_6LKQ_1021/t/1059:1063,
1/t/1075:1079		No text annotation
geometric
IL_4V9F_043
NA
IL_6LKQ_1031/t/1196:1198,
1/t/1247:1250		Isolated cWS basepair
homologous
IL_5J7L_286
NA
IL_6LKQ_1041/t/1202:1206,
1/t/1240:1243		No text annotation
homologous
IL_5J7L_287
NA
IL_6LKQ_1051/t/1208:1215,
1/t/1234:1238		Kink-turn
homologous
IL_5J7L_288
NA
IL_6LKQ_1061/t/1262:1269,
1/t/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_6LKQ_1071/t/1310:1313,
1/t/1603:1604		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_6LKQ_1081/t/1319:1323,
1/t/1331:1333		C-loop
homologous
IL_5J7L_291
NA
IL_6LKQ_1091/t/1351:1355,
1/t/1376:1380		UAA/GAN
homologous
IL_5J7L_292
NA
IL_6LKQ_1101/t/1357:1361,
1/t/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
NA
IL_6LKQ_1861/t/1415:1416,
1/t/1582:1587		No text annotation
homologous
IL_5J7L_294
NA
IL_6LKQ_1121/t/1417:1421,
1/t/1577:1581		UAA/GAN
homologous
IL_5J7L_295
NA
IL_6LKQ_1131/t/1432:1435,
1/t/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
NA
IL_6LKQ_1141/t/1437:1440,
1/t/1551:1555		tSH-tHW
homologous
IL_5J7L_297
NA
IL_6LKQ_1151/t/1450:1451,
1/t/1459:1461		Single bulged U
homologous
IL_5J7L_298
NA
IL_6LKQ_1161/t/1468:1471,
1/t/1520:1524		No text annotation
homologous
IL_5J7L_299
NA
IL_6LKQ_1171/t/1474:1478,
1/t/1513:1517		tSH-tHW-tHS
homologous
IL_5J7L_300
NA
IL_6LKQ_1951/t/1481:1482,
1/t/1507:1510		180 degree turn
homologous
IL_5J7L_301
NA
IL_6LKQ_1191/t/1489:1491,
1/t/1499:1500		Single bulged A
homologous
IL_5J7L_302
NA
IL_6LKQ_1201/t/1526:1529,
1/t/1542:1546		UAA/GAN variation
homologous
IL_5J7L_303
NA
IL_6LKQ_1211/t/1651:1656,
1/t/2004:2006		No text annotation
homologous
IL_5J7L_304
NA
IL_6LKQ_1221/t/1663:1665,
1/t/1995:1997		Isolated tWW turn
homologous
IL_5J7L_305
NA
IL_6LKQ_1231/t/1666:1669,
1/t/1993:1994		Major groove platform; stack outside cWW
homologous
IL_5J7L_306
NA
IL_6LKQ_1881/t/1666:1674,
1/t/1990:1994		No text annotation
homologous
IL_5J7L_386
NA
IL_6LKQ_1241/t/1669:1674,
1/t/1990:1993		Intercalated tWH
geometric
IL_5J7L_307
NA
IL_6LKQ_1251/t/1686:1691,
1/t/1696:1702		tSH-tSH-tHH-tHS
homologous
IL_5J7L_308
NA
IL_6LKQ_1261/t/1712:1718,
1/t/1742:1746		6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
NA
IL_6LKQ_1271/t/1720:1724,
1/t/1736:1740		Triple sheared
homologous
IL_5J7L_310
NA
IL_6LKQ_1281/t/1770:1771,
1/t/1980:1982		Single bulged A
homologous
IL_5J7L_312
NA
IL_6LKQ_1291/t/1798:1804,
1/t/1813:1821		Kink-turn related
homologous
IL_5J7L_313
NA
IL_6LKQ_1301/t/1837:1840,
1/t/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_6LKQ_1311/t/1841:1842,
1/t/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_6LKQ_1321/t/1846:1849,
1/t/1893:1894		Major groove minor groove platform; mini C-loop
homologous
IL_4WF9_072
IL_73108.2
IL_6LKQ_1891/t/1851:1860,
1/t/1882:1891		No text annotation
homologous
IL_5J7L_387
NA
IL_6LKQ_1331/t/1864:1867,
1/t/1874:1878		UAA/GAN related
homologous
IL_5J7L_317
NA
IL_6LKQ_1341/t/1933:1934,
1/t/1964:1967		Bulged stacked bases
geometric
IL_5J7L_318
NA
IL_6LKQ_1351/t/1934:1945,
1/t/1961:1964		No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_6LKQ_1361/t/2050:2052,
1/t/2617:2618		Major groove platform
homologous
IL_7RQB_078
NA
IL_6LKQ_1371/t/2054:2056,
1/t/2612:2615		No text annotation
homologous
IL_5J7L_321
NA
IL_6LKQ_1381/t/2067:2069,
1/t/2442:2443		Single bulged U
homologous
IL_7A0S_075
IL_97561.2
IL_6LKQ_1391/t/2070:2071,
1/t/2438:2441		Minor groove platform
homologous
IL_7A0S_076
IL_34520.2
IL_6LKQ_1401/t/2081:2083,
1/t/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
NA
IL_6LKQ_1411/t/2085:2087,
1/t/2232:2234		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
NA
IL_6LKQ_1961/t/2103:2105,
1/t/2184:2186		No text annotation
IL_6LKQ_1431/t/2202:2204,
1/t/2220:2221		Single bulged U
homologous
IL_5J7L_331
NA
IL_6LKQ_1441/t/2350:2353,
1/t/2364:2367		Double sheared
homologous
IL_5J7L_333
NA
IL_6LKQ_1451/t/2401:2403,
1/t/2414:2415		No text annotation
geometric
IL_9AXU_122
IL_97561.2
IL_6LKQ_1461/t/2453:2454,
1/t/2498:2500		Single stack bend
homologous
IL_4WF9_089
IL_15011.2
IL_6LKQ_1471/t/2454:2455,
1/t/2496:2498		Major groove platform
geometric
IL_7RQB_092
NA
IL_6LKQ_1481/t/2457:2459,
1/t/2493:2494		Major groove platform
homologous
IL_7A0S_085
IL_48076.8
IL_6LKQ_1491/t/2459:2461,
1/t/2489:2493		Major groove minor groove platform with extra cWW
geometric
IL_7A0S_086
IL_36931.2
IL_6LKQ_1501/t/2466:2470,
1/t/2480:2484		Double sheared with non-canonical cWW
homologous
IL_5J7L_338
NA
IL_6LKQ_1511/t/2507:2508,
1/t/2580:2582		Major groove platform
homologous
IL_7RQB_096
NA
IL_6LKQ_1521/t/2510:2512,
1/t/2574:2578		Isolated non-canonical cWW with bulges
geometric
IL_5J7L_340
NA
IL_6LKQ_1531/t/2512:2513,
1/t/2571:2574		No text annotation
homologous
IL_5J7L_341
NA
IL_6LKQ_1541/t/2522:2523,
1/t/2540:2543		Major groove platform with intercalation
homologous
IL_5J7L_342
NA
IL_6LKQ_1551/t/2591:2592,
1/t/2601:2603		Single bulged A
homologous
IL_5J7L_344
NA
IL_6LKQ_1561/t/2636:2640,
1/t/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
NA
IL_6LKQ_1571/t/2652:2658,
1/t/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_5J7L_346
NA
IL_6LKQ_1581/t/2680:2684,
1/t/2725:2727		C-loop
homologous
IL_5J7L_347
NA
IL_6LKQ_1591/t/2687:2691,
1/t/2718:2722		UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_6LKQ_1601/t/2695:2696,
1/t/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
NA
IL_6LKQ_1611/t/2737:2742,
1/t/2762:2767		UAA/GAN with extra cWW
homologous
IL_5J7L_350
NA
IL_6LKQ_1621/t/2806:2811,
1/t/2889:2892		No text annotation
homologous
IL_5J7L_351
NA
IL_6LKQ_1631/t/2838:2839,
1/t/2878:2880		Major groove intercalation
homologous
IL_5J7L_352
NA
IL_6LKQ_1641/t/2843:2846,
1/t/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
NA
IL_6LKQ_1651/t/2847:2852,
1/t/2865:2869		tHS double platform
homologous
IL_5J7L_354
NA
IL_6LKQ_1661/u/17:18,
1/u/65:67		Major groove intercalation
homologous
IL_5J7L_355
NA
IL_6LKQ_1671/u/23:28,
1/u/56:60		No text annotation
geometric
IL_5J7L_356
NA
IL_6LKQ_1911/u/23:31,
1/u/51:60		No text annotation
IL_6LKQ_1681/u/28:31,
1/u/51:56		No text annotation
IL_6LKQ_1691/u/34:38,
1/u/44:48		Symmetric double minor groove platform
geometric
IL_5J7L_358
NA
IL_6LKQ_1701/u/71:79,
1/u/97:105		Bacterial 5S Loop E
homologous
IL_5J7L_359
NA

Problematic loops

#loop idProblemSequence
IL_6LKQ_171No text annotation
IL_6LKQ_007No text annotation
IL_6LKQ_015No text annotation
IL_6LKQ_020No text annotation
IL_6LKQ_024No text annotation
IL_6LKQ_029No text annotation
IL_6LKQ_176No text annotation
IL_6LKQ_177No text annotation
IL_6LKQ_047No text annotation
IL_6LKQ_178No text annotation
IL_6LKQ_179No text annotation
IL_6LKQ_071No text annotation
IL_6LKQ_092No text annotation
IL_6LKQ_101No text annotation
IL_6LKQ_111No text annotation
IL_6LKQ_118No text annotation
IL_6LKQ_187Isolated non-canonical cWW pair
IL_6LKQ_190Triple sheared related
IL_6LKQ_142No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6LKQ_0011/s/46:47,
1/s/361:367,
1/s/393:395		No text annotation
homologous
J3_5J7L_001
NA
J3_6LKQ_0251/s/46:52,
1/s/359:367,
1/s/393:395		No text annotation
homologous
J3_5J7L_050
NA
J3_6LKQ_0021/s/586:588,
1/s/651:654,
1/s/754:755		No text annotation
homologous
J3_5J7L_002
NA
J3_6LKQ_0261/s/586:588,
1/s/651:655,
1/s/751:755		No text annotation
homologous
J3_5J7L_051
NA
J3_6LKQ_0271/s/672:677,
1/s/713:725,
1/s/732:734		No text annotation
J3_6LKQ_0031/s/826:829,
1/s/857:861,
1/s/868:874		No text annotation
homologous
J3_5J7L_004
NA
J3_6LKQ_0281/s/936:939,
1/s/1344:1352,
1/s/1370:1379		No text annotation
J3_6LKQ_0291/s/943:947,
1/s/1234:1237,
1/s/1337:1340		No text annotation
J3_6LKQ_0051/s/990:999,
1/s/1041:1047,
1/s/1210:1215		No text annotation
J3_6LKQ_0071/s/1063:1068,
1/s/1107:1113,
1/s/1187:1193		No text annotation
homologous
J3_5J7L_008
NA
J3_6LKQ_0081/s/1073:1074,
1/s/1083:1087,
1/s/1098:1102		No text annotation
homologous
J3_6CZR_024
NA
J3_6LKQ_0091/s/1116:1118,
1/s/1155:1158,
1/s/1181:1184		No text annotation
homologous
J3_5J7L_010
NA
J3_6LKQ_0301/s/1116:1118,
1/s/1155:1161,
1/s/1175:1184		No text annotation
homologous
J3_5J7L_054
NA
J3_6LKQ_0101/s/1237:1241,
1/s/1296:1303,
1/s/1334:1337		No text annotation
geometric
J3_5J7L_011
NA
J3_6LKQ_0381/s/1237:1241,
1/s/1296:1308,
1/s/1329:1337		No text annotation
J3_6LKQ_0111/t/30:31,
1/t/474:481,
1/t/509:510		No text annotation
homologous
J3_7RQB_001
NA
J3_6LKQ_0321/t/30:31,
1/t/474:484,
1/t/496:510		No text annotation
homologous
J3_4WF9_011
J3_17917.1
J3_6LKQ_0331/t/32:35,
1/t/445:461,
1/t/468:473		No text annotation
homologous
J3_5J7L_067
NA
J3_6LKQ_0121/t/56:57,
1/t/70:76,
1/t/110:114		No text annotation
homologous
J3_5J7L_037
NA
J3_6LKQ_0341/t/297:301,
1/t/316:325,
1/t/337:341		No text annotation
homologous
J3_5J7L_068
NA
J3_6LKQ_0131/t/683:689,
1/t/773:775,
1/t/791:794		No text annotation
homologous
J3_5J7L_038
NA
J3_6LKQ_0141/t/698:700,
1/t/732:736,
1/t/760:763		No text annotation
homologous
J3_5J7L_039
NA
J3_6LKQ_0151/t/1055:1059,
1/t/1079:1090,
1/t/1101:1104		No text annotation
J3_6LKQ_0161/t/1298:1303,
1/t/1625:1627,
1/t/1639:1642		No text annotation
homologous
J3_5J7L_041
NA
J3_6LKQ_0171/t/1306:1309,
1/t/1605:1611,
1/t/1620:1622		No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_6LKQ_0181/t/1344:1349,
1/t/1382:1385,
1/t/1402:1403		No text annotation
homologous
J3_5J7L_043
NA
J3_6LKQ_0351/t/1424:1429,
1/t/1564:1565,
1/t/1568:1574		No text annotation
homologous
J3_5J7L_069
NA
J3_6LKQ_0191/t/2091:2093,
1/t/2196:2200,
1/t/2223:2228		Kink-turn 3-way junction
homologous
J3_5J7L_044
NA
J3_6LKQ_0361/t/2282:2284,
1/t/2384:2395,
1/t/2421:2427		No text annotation
homologous
J3_5J7L_070
NA
J3_6LKQ_0201/t/2295:2299,
1/t/2317:2323,
1/t/2332:2337		No text annotation
homologous
J3_5J7L_071
NA
J3_6LKQ_0211/t/2517:2520,
1/t/2545:2547,
1/t/2561:2567		No text annotation
homologous
J3_5J7L_046
NA
J3_6LKQ_0221/t/2789:2791,
1/t/2805:2806,
1/t/2892:2894		No text annotation
homologous
J3_5J7L_047
NA
J3_6LKQ_0231/t/2812:2815,
1/t/2831:2836,
1/t/2882:2888		No text annotation
homologous
J3_5J7L_048
NA
J3_6LKQ_0241/u/10:16,
1/u/68:70,
1/u/106:110		No text annotation
homologous
J3_7A0S_014
NA
J4_6LKQ_0011/s/115:122,
1/s/239:240,
1/s/286:289,
1/s/311:312		No text annotation
homologous
J4_5J7L_001
NA
J4_6LKQ_0151/s/142:144,
1/s/178:184,
1/s/193:198,
1/s/219:221		No text annotation
homologous
J4_5J7L_002
NA
J4_6LKQ_0031/s/575:577,
1/s/764:769,
1/s/810:821,
1/s/879:880		No text annotation
homologous
J4_5J7L_003
NA
J4_6LKQ_0041/t/268:269,
1/t/370:375,
1/t/399:406,
1/t/421:424		No text annotation
homologous
J4_5J7L_018
NA
J4_6LKQ_0051/t/297:301,
1/t/316:319,
1/t/323:325,
1/t/337:341		No text annotation
homologous
J4_5J7L_019
NA
J4_6LKQ_0061/t/601:604,
1/t/624:628,
1/t/635:638,
1/t/650:656		No text annotation
homologous
J4_5J7L_020
NA
J4_6LKQ_0071/t/1270:1276,
1/t/1294:1295,
1/t/1645:1648,
1/t/2009:2010		No text annotation
homologous
J4_5J7L_021
NA
J4_6LKQ_0081/t/1310:1314,
1/t/1338:1343,
1/t/1404:1405,
1/t/1597:1604		No text annotation
homologous
J4_5J7L_022
NA
J4_6LKQ_0091/t/1313:1314,
1/t/1338:1343,
1/t/1404:1405,
1/t/1597:1603		No text annotation
homologous
J4_5J7L_023
NA
J4_6LKQ_0101/t/1444:1445,
1/t/1466:1467,
1/t/1525:1526,
1/t/1546:1547		No text annotation
homologous
J4_5J7L_024
NA
J4_6LKQ_0111/t/1772:1776,
1/t/1788:1792,
1/t/1827:1830,
1/t/1975:1979		No text annotation
homologous
J4_5J7L_025
NA
J4_6LKQ_0121/t/1833:1835,
1/t/1905:1906,
1/t/1924:1933,
1/t/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_6LKQ_0131/t/2285:2289,
1/t/2343:2347,
1/t/2370:2372,
1/t/2381:2383		No text annotation
homologous
J4_9DFE_009
J4_98139.1
J4_6LKQ_0141/t/2643:2646,
1/t/2674:2676,
1/t/2731:2735,
1/t/2769:2771		No text annotation
homologous
J4_5J7L_028
NA
J5_6LKQ_0011/s/36:39,
1/s/403:406,
1/s/436:440,
1/s/497:500,
1/s/545:548		No text annotation
homologous
J5_5J7L_001
NA
J5_6LKQ_0021/s/36:39,
1/s/403:406,
1/s/436:442,
1/s/492:500,
1/s/545:548		No text annotation
homologous
J5_5J7L_002
NA
J5_6LKQ_0031/s/58:61,
1/s/106:113,
1/s/314:316,
1/s/337:339,
1/s/350:354		No text annotation
homologous
J5_5J7L_003
NA
J5_6LKQ_0041/t/47:54,
1/t/116:121,
1/t/130:131,
1/t/148:150,
1/t/176:178		No text annotation
homologous
J5_5J7L_013
NA
J5_6LKQ_0051/t/531:533,
1/t/560:564,
1/t/577:579,
1/t/1261:1262,
1/t/2017:2018		No text annotation
homologous
J5_5J7L_014
NA
J5_6LKQ_0061/t/584:589,
1/t/668:671,
1/t/809:812,
1/t/1195:1196,
1/t/1250:1256		No text annotation
homologous
J5_5J7L_015
NA
J5_6LKQ_0071/t/1674:1682,
1/t/1706:1707,
1/t/1751:1752,
1/t/1756:1764,
1/t/1988:1990		No text annotation
homologous
J5_5J7L_016
NA
J5_6LKQ_0081/t/2057:2064,
1/t/2446:2453,
1/t/2500:2506,
1/t/2583:2588,
1/t/2606:2611		No text annotation
J5_6LKQ_0091/t/2074:2077,
1/t/2243:2246,
1/t/2258:2259,
1/t/2281:2282,
1/t/2427:2435		No text annotation
homologous
J5_4WF9_007
J5_39529.2
J6_6LKQ_0011/t/45:46,
1/t/179:183,
1/t/214:224,
1/t/231:235,
1/t/262:266,
1/t/426:433		No text annotation
J6_6LKQ_0021/t/2074:2077,
1/t/2243:2246,
1/t/2258:2259,
1/t/2281:2284,
1/t/2384:2395,
1/t/2421:2435		No text annotation
J7_6LKQ_0011/t/8:15,
1/t/525:531,
1/t/2018:2023,
1/t/2040:2043,
1/t/2625:2630,
1/t/2788:2789,
1/t/2894:2895		No text annotation
J7_6LKQ_0021/t/817:822,
1/t/835:838,
1/t/940:946,
1/t/971:976,
1/t/987:991,
1/t/1163:1164,
1/t/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_6LKQ_004No text annotation
J3_6LKQ_006No text annotation
J3_6LKQ_037No text annotation
J3_6LKQ_031No text annotation
J4_6LKQ_002No text annotation

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