3D structure

PDB id
6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
6LKQ|1|s|U|1030, 6LKQ|1|s|C|1031
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6LKQ_022 not in the Motif Atlas
Geometric match to HL_4V9F_003
Geometric discrepancy: 0.3463
The information below is about HL_4V9F_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.6
Basepair signature
cWW-F
Number of instances in this motif group
21

Unit IDs

6LKQ|1|s|C|1028
6LKQ|1|s|U|1029
6LKQ|1|s|U|1030
6LKQ|1|s|C|1031
6LKQ|1|s|G|1032
6LKQ|1|s|G|1033

Current chains

Chain s
16S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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