HL_6LKQ_026

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

6LKQ|1|s|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_026 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.315

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6LKQ|1|s|U|1165
6LKQ|1|s|G|1166
6LKQ|1|s|A|1167
6LKQ|1|s|U|1168
6LKQ|1|s|A|1169
6LKQ|1|s|A|1170
6LKQ|1|s|A|1171

Current chains

Chain s

16S ribosomal RNA

Nearby chains

Chain A

30S ribosomal protein S2