HL_6LKQ_029
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUCAGAAUGC
- Length
- 11 nucleotides
- Bulged bases
- 6LKQ|1|s|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LKQ_029 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.2487
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6LKQ|1|s|G|1356
6LKQ|1|s|A|1357
6LKQ|1|s|U|1358
6LKQ|1|s|C|1359
6LKQ|1|s|A|1360
6LKQ|1|s|G|1361
6LKQ|1|s|A|1362
6LKQ|1|s|A|1363
6LKQ|1|s|U|1364
6LKQ|1|s|G|1365
6LKQ|1|s|C|1366
Current chains
- Chain s
- 16S ribosomal RNA
Nearby chains
- Chain B
- 30S ribosomal protein S3
- Chain H
- 30S ribosomal protein S9
- Chain I
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S14
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