HL_6LKQ_031

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_031 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.154

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6LKQ|1|s|G|1515
6LKQ|1|s|G|1516
6LKQ|1|s|G|1517
6LKQ|1|s|A|1518
6LKQ|1|s|A|1519
6LKQ|1|s|C|1520

Current chains

Chain s

16S ribosomal RNA

Nearby chains

Chain 7

Viomycin

Chain AA

Viomycin

Chain t

Large subunit ribosomal RNA; LSU rRNA