HL_6LKQ_051

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

6LKQ|1|t|U|646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_051 not in the Motif Atlas

Homologous match to HL_5J7L_153

Geometric discrepancy: 0.2654

The information below is about HL_5J7L_153

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13529.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6LKQ|1|t|U|641
6LKQ|1|t|U|642
6LKQ|1|t|A|643
6LKQ|1|t|A|644
6LKQ|1|t|C|645
6LKQ|1|t|U|646
6LKQ|1|t|G|647

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L33

Chain l

50S ribosomal protein L35