HL_6LKQ_061

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGACGCUUAUGCGUUG

Length

16 nucleotides

Bulged bases

6LKQ|1|t|U|1174, 6LKQ|1|t|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LKQ|1|t|C|1167
6LKQ|1|t|G|1168
6LKQ|1|t|A|1169
6LKQ|1|t|C|1170
6LKQ|1|t|G|1171
6LKQ|1|t|C|1172
6LKQ|1|t|U|1173
6LKQ|1|t|U|1174
6LKQ|1|t|A|1175
6LKQ|1|t|U|1176
6LKQ|1|t|G|1177
6LKQ|1|t|C|1178
6LKQ|1|t|G|1179
6LKQ|1|t|U|1180
6LKQ|1|t|U|1181
6LKQ|1|t|G|1182

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 9

50S ribosomal protein L21

Chain h

50S ribosomal protein L30